| TF name | Position | PWM scan score |
| CysB | 82-123 | 23.841 |
| NagC | 363-385 | 20.902 |
| ArcA | 336-396 | 19.623 |
| GcvA | 248-276 | 18.096 |
| H-NS | 33-47 | 17.367 |
| MelR | 7-24 | 16.053 |
| GntR | 249-268 | 15.482 |
| GadE | 33-52 | 15.444 |
| Fis | 255-275 | 15.347 |
| OxyR | 108-152 | 14.381 |
| UxuR | 311-328 | 14.124 |
| OmpR | 368-387 | 13.859 |
| Nac | 34-48 | 13.832 |
| CRP | 354-375 | 13.338 |
| PhoB | 242-261 | 13.029 |
| DeoR | 215-230 | 12.926 |
| UlaR | 7-26 | 12.845 |
| GlpR | 354-373 | 12.572 |
| PhoP | 28-44 | 12.438 |
| Mlc | 374-396 | 12.094 |
| CpxR | 316-330 | 11.938 |
| AgaR | 352-375 | 11.937 |
| PspF | 311-327 | 11.699 |
| FNR | 255-276 | 11.399 |
| ArgR | 368-383 | 11.225 |
| RcsB | 30-43 | 11.173 |
| Rob | 30-50 | 11.006 |
| ModE | 332-358 | 10.960 |
| IHF | 27-39 | 10.864 |
| Lrp | 32-43 | 10.840 |
| CytR | 9-48 | 10.512 |
| DcuR | 106-160 | 10.080 |
| ArgP | 250-262 | 9.941 |
| PurR | 146-161 | 9.825 |
| XylR | 247-264 | 9.332 |
| SoxS | 5-22 | 9.223 |
| TorR | 257-266 | 9.030 |
| MarA | 74-94 | 9.000 |
| NarL | 338-344 | 8.993 |
| DnaA | 37-45 | 8.866 |
| AraC | 345-362 | 7.985 |
| TyrR | 158-179 | 7.808 |
| MetR | 2-25 | 7.685 |
| Fur | 366-380 | 7.622 |
| GalR | 139-154 | 7.615 |
| GalS | 139-154 | 7.615 |
| FadR | 382-398 | 7.589 |
| LacI | 17-37 | 7.278 |
| MetJ | 307-314 | 7.044 |
| Ada | 132-159 | 6.496 |
| RhaS | 198-214 | 6.475 |
| NorR | 216-232 | 6.115 |
| IdnR | 196-211 | 5.913 |
| NarP | 151-157 | 5.632 |