| TF name | Position | PWM scan score |
| OxyR | 200-244 | 17.832 |
| Fur | 251-265 | 15.492 |
| CysB | 36-77 | 14.009 |
| Rob | 254-274 | 13.734 |
| IHF | 68-80 | 13.668 |
| RhaS | 47-63 | 12.955 |
| ModE | 314-340 | 12.561 |
| TyrR | 321-342 | 11.718 |
| AraC | 68-85 | 11.617 |
| GntR | 248-267 | 11.616 |
| MarA | 26-46 | 11.563 |
| GadE | 213-232 | 11.117 |
| ArcA | 188-248 | 11.072 |
| ArgP | 213-225 | 11.056 |
| NorR | 307-323 | 11.017 |
| Lrp | 229-240 | 10.731 |
| Fis | 251-271 | 10.637 |
| Nac | 249-263 | 10.592 |
| UlaR | 323-342 | 10.525 |
| UxuR | 215-232 | 10.367 |
| SoxS | 220-237 | 10.281 |
| RcsB | 72-85 | 9.849 |
| GalR | 42-57 | 9.551 |
| GalS | 42-57 | 9.551 |
| NarL | 231-237 | 9.376 |
| FNR | 311-332 | 9.000 |
| PspF | 250-266 | 8.936 |
| Mlc | 94-116 | 8.350 |
| NarP | 214-220 | 8.306 |
| NagC | 325-347 | 8.286 |
| XylR | 10-27 | 8.247 |
| FadR | 203-219 | 8.136 |
| DeoR | 50-65 | 8.135 |
| FruR | 300-317 | 7.824 |
| PhoP | 370-386 | 7.727 |
| H-NS | 326-340 | 7.694 |
| LexA | 307-326 | 7.531 |
| OmpR | 324-343 | 7.445 |
| TorR | 229-238 | 7.143 |
| CRP | 250-271 | 6.860 |
| NtrC | 159-175 | 6.845 |
| DnaA | 261-269 | 6.809 |
| GlpR | 46-65 | 6.383 |
| CytR | 220-259 | 6.340 |
| IdnR | 358-373 | 6.178 |
| CpxR | 323-337 | 6.147 |
| MetJ | 290-297 | 6.077 |
| PurR | 84-99 | 5.962 |
| PhoB | 249-268 | 5.788 |
| MalT | 251-260 | 5.653 |
| AgaR | 215-238 | 5.629 |
| ArgR | 70-85 | 5.386 |
| Ada | 23-50 | 5.324 |
| LacI | 123-143 | 5.206 |
| MelR | 205-222 | 5.079 |