| TF name | Position | PWM scan score |
| ArcA | 191-251 | 28.132 |
| Rob | 242-262 | 19.919 |
| CysB | 347-388 | 19.764 |
| RcsB | 176-189 | 19.462 |
| CytR | 205-244 | 17.808 |
| OmpR | 207-226 | 17.806 |
| Ada | 70-97 | 17.562 |
| LexA | 117-136 | 17.361 |
| Fis | 295-315 | 16.182 |
| FNR | 360-381 | 15.295 |
| GcvA | 135-163 | 15.150 |
| AraC | 29-46 | 14.867 |
| CRP | 303-324 | 14.662 |
| H-NS | 141-155 | 14.533 |
| AgaR | 53-76 | 13.611 |
| Fur | 178-192 | 13.518 |
| XylR | 137-154 | 13.405 |
| OxyR | 173-217 | 13.369 |
| NorR | 1-17 | 13.173 |
| GlpR | 124-143 | 12.996 |
| PhoP | 299-315 | 12.740 |
| UlaR | 272-291 | 12.556 |
| DcuR | 32-86 | 12.474 |
| NagC | 249-271 | 12.394 |
| GntR | 289-308 | 11.786 |
| PhoB | 367-386 | 11.756 |
| TyrR | 285-306 | 11.227 |
| CpxR | 38-52 | 11.177 |
| ArgR | 224-239 | 10.900 |
| GadE | 376-395 | 10.881 |
| MarA | 137-157 | 10.778 |
| SoxS | 367-384 | 10.774 |
| MelR | 98-115 | 10.650 |
| IHF | 203-215 | 10.575 |
| DeoR | 119-134 | 10.551 |
| ArgP | 3-15 | 10.488 |
| Lrp | 119-130 | 10.390 |
| FadR | 364-380 | 10.228 |
| IdnR | 39-54 | 10.036 |
| UxuR | 145-162 | 9.917 |
| Nac | 207-221 | 9.802 |
| NarL | 180-186 | 9.580 |
| MetJ | 122-129 | 9.382 |
| MetR | 359-382 | 9.341 |
| ModE | 170-196 | 8.935 |
| PspF | 169-185 | 8.664 |
| NarP | 11-17 | 8.306 |
| GalS | 241-256 | 7.995 |
| GalR | 241-256 | 7.995 |
| DnaA | 189-197 | 7.974 |
| Mlc | 286-308 | 7.628 |
| FhlA | 289-328 | 7.193 |
| CaiF | 121-165 | 6.632 |
| TorR | 1-10 | 6.577 |
| FruR | 180-197 | 6.207 |
| PurR | 241-256 | 5.707 |