| TF name | Position | PWM scan score |
| ArcA | 197-257 | 24.471 |
| AgaR | 204-227 | 20.386 |
| Rob | 36-56 | 19.919 |
| CysB | 141-182 | 19.764 |
| OmpR | 1-20 | 17.806 |
| Fis | 89-109 | 16.182 |
| CpxR | 251-265 | 15.637 |
| FNR | 154-175 | 15.295 |
| CRP | 97-118 | 14.662 |
| ArgR | 198-213 | 14.572 |
| CytR | 205-244 | 14.156 |
| UlaR | 202-221 | 14.111 |
| TyrR | 269-290 | 13.800 |
| LexA | 251-270 | 13.630 |
| RcsB | 72-85 | 13.326 |
| H-NS | 12-26 | 13.066 |
| Ada | 274-301 | 12.932 |
| NagC | 349-371 | 12.902 |
| PhoP | 93-109 | 12.740 |
| GadE | 194-213 | 12.643 |
| IHF | 370-382 | 12.548 |
| NorR | 225-241 | 12.528 |
| SoxS | 358-375 | 12.499 |
| Mlc | 268-290 | 12.368 |
| GntR | 83-102 | 11.786 |
| PhoB | 161-180 | 11.756 |
| GlpR | 35-54 | 11.562 |
| IdnR | 262-277 | 11.453 |
| OxyR | 188-232 | 11.328 |
| XylR | 261-278 | 10.835 |
| PspF | 306-322 | 10.460 |
| DeoR | 224-239 | 10.426 |
| Lrp | 253-264 | 10.316 |
| FadR | 158-174 | 10.228 |
| GcvA | 196-224 | 10.177 |
| MetR | 194-217 | 10.143 |
| RhaS | 215-231 | 10.137 |
| ModE | 335-361 | 9.804 |
| Nac | 1-15 | 9.802 |
| AraC | 54-71 | 8.988 |
| GalS | 359-374 | 8.862 |
| GalR | 359-374 | 8.862 |
| MelR | 196-213 | 8.762 |
| MarA | 356-376 | 8.386 |
| TorR | 299-308 | 8.329 |
| NarL | 252-258 | 8.280 |
| Fur | 34-48 | 8.080 |
| FruR | 273-290 | 7.994 |
| DcuR | 238-292 | 7.958 |
| ArgP | 161-173 | 7.353 |
| FhlA | 83-122 | 7.193 |
| NtrC | 190-206 | 6.947 |
| MalT | 280-289 | 6.846 |
| NarP | 3-9 | 6.781 |
| DnaA | 153-161 | 6.017 |
| PurR | 359-374 | 5.849 |
| LacI | 350-370 | 5.844 |
| MetJ | 263-270 | 5.813 |
| UxuR | 246-263 | 5.737 |