| TF name | Position | PWM scan score |
| ArcA | 320-380 | 27.978 |
| Mlc | 360-382 | 20.463 |
| AgaR | 20-43 | 20.386 |
| NagC | 362-384 | 19.992 |
| CysB | 342-383 | 19.615 |
| CpxR | 67-81 | 15.637 |
| ArgR | 14-29 | 14.572 |
| ModE | 261-287 | 14.516 |
| OxyR | 219-263 | 14.284 |
| CytR | 21-60 | 14.156 |
| UlaR | 18-37 | 14.111 |
| CRP | 85-106 | 13.931 |
| TyrR | 85-106 | 13.800 |
| LexA | 67-86 | 13.630 |
| Fur | 230-244 | 13.279 |
| OmpR | 69-88 | 13.113 |
| FNR | 272-293 | 13.025 |
| Ada | 90-117 | 12.932 |
| GadE | 10-29 | 12.643 |
| IHF | 186-198 | 12.548 |
| NorR | 41-57 | 12.528 |
| SoxS | 174-191 | 12.499 |
| MetR | 243-266 | 12.382 |
| Fis | 180-200 | 12.313 |
| DeoR | 264-279 | 12.256 |
| IdnR | 232-247 | 12.252 |
| DnaA | 320-328 | 11.805 |
| Rob | 79-99 | 11.795 |
| AraC | 224-241 | 11.681 |
| Lrp | 288-299 | 11.268 |
| H-NS | 369-383 | 11.140 |
| PspF | 347-363 | 11.068 |
| XylR | 77-94 | 10.835 |
| Nac | 367-381 | 10.818 |
| GcvA | 235-263 | 10.631 |
| PhoP | 16-32 | 10.614 |
| GlpR | 361-380 | 10.138 |
| RhaS | 31-47 | 10.137 |
| RcsB | 239-252 | 9.700 |
| GntR | 288-307 | 9.455 |
| PhoB | 256-275 | 9.215 |
| FhlA | 205-244 | 9.055 |
| GalR | 175-190 | 8.862 |
| GalS | 175-190 | 8.862 |
| DcuR | 210-264 | 8.818 |
| MelR | 12-29 | 8.762 |
| MarA | 172-192 | 8.386 |
| TorR | 115-124 | 8.329 |
| NarL | 68-74 | 8.280 |
| NarP | 233-239 | 8.031 |
| FruR | 89-106 | 7.994 |
| ArgP | 370-382 | 7.585 |
| NtrC | 302-318 | 7.117 |
| MalT | 96-105 | 6.846 |
| PurR | 175-190 | 5.849 |
| LacI | 166-186 | 5.844 |
| MetJ | 79-86 | 5.813 |
| UxuR | 62-79 | 5.737 |