| TF name | Position | PWM scan score |
| ArcA | 331-391 | 20.732 |
| ArgR | 40-55 | 15.696 |
| NagC | 28-50 | 15.437 |
| ModE | 286-312 | 14.865 |
| FNR | 32-53 | 14.552 |
| CysB | 326-367 | 14.087 |
| Mlc | 26-48 | 13.596 |
| GlpR | 296-315 | 13.419 |
| MarA | 349-369 | 12.579 |
| OxyR | 343-387 | 12.342 |
| Fis | 26-46 | 12.106 |
| GcvA | 191-219 | 11.737 |
| IHF | 195-207 | 11.717 |
| CRP | 294-315 | 11.711 |
| GadE | 42-61 | 11.250 |
| H-NS | 340-354 | 11.220 |
| NtrC | 291-307 | 11.105 |
| Nac | 336-350 | 11.063 |
| OmpR | 335-354 | 10.725 |
| UlaR | 64-83 | 10.452 |
| Rob | 341-361 | 10.236 |
| CytR | 304-343 | 10.228 |
| TorR | 217-226 | 9.987 |
| LacI | 255-275 | 9.796 |
| Lrp | 359-370 | 9.654 |
| TyrR | 70-91 | 9.647 |
| XylR | 333-350 | 9.480 |
| PhoP | 351-367 | 9.312 |
| SoxS | 190-207 | 9.280 |
| RcsB | 298-311 | 9.009 |
| AraC | 344-361 | 8.945 |
| PhoB | 350-369 | 8.899 |
| AgaR | 182-205 | 8.759 |
| ArgP | 182-194 | 8.344 |
| IdnR | 189-204 | 8.062 |
| DnaA | 273-281 | 7.924 |
| NarL | 363-369 | 7.791 |
| NarP | 203-209 | 7.762 |
| NorR | 60-76 | 7.532 |
| CpxR | 201-215 | 7.231 |
| PurR | 7-22 | 7.125 |
| DeoR | 112-127 | 7.115 |
| UxuR | 48-65 | 7.073 |
| MetJ | 3-10 | 6.769 |
| Fur | 183-197 | 6.675 |
| DcuR | 311-365 | 6.615 |
| FadR | 185-201 | 6.328 |
| GntR | 187-206 | 5.450 |
| MelR | 335-352 | 5.422 |
| PspF | 62-78 | 5.407 |
| Ada | 12-39 | 5.257 |