| TF name | Position | PWM scan score |
| ArcA | 100-160 | 23.864 |
| CysB | 125-166 | 22.942 |
| Mlc | 370-392 | 20.296 |
| CytR | 356-395 | 20.026 |
| Fis | 132-152 | 16.827 |
| AgaR | 370-393 | 16.061 |
| IHF | 373-385 | 15.571 |
| OmpR | 110-129 | 15.298 |
| PhoP | 144-160 | 14.997 |
| PhoB | 122-141 | 14.805 |
| GlpR | 243-262 | 14.793 |
| SoxS | 358-375 | 14.709 |
| UlaR | 368-387 | 14.615 |
| FNR | 364-385 | 14.534 |
| MelR | 140-157 | 14.224 |
| RhaS | 80-96 | 13.842 |
| NagC | 308-330 | 13.587 |
| MarA | 237-257 | 13.385 |
| H-NS | 137-151 | 13.301 |
| ArgP | 138-150 | 13.265 |
| UxuR | 139-156 | 13.231 |
| PspF | 263-279 | 12.911 |
| Lrp | 367-378 | 12.598 |
| XylR | 161-178 | 12.093 |
| ArgR | 138-153 | 11.721 |
| LexA | 347-366 | 11.707 |
| DeoR | 127-142 | 11.673 |
| CRP | 371-392 | 11.595 |
| Nac | 375-389 | 11.462 |
| GcvA | 6-34 | 11.210 |
| RcsB | 113-126 | 11.165 |
| DcuR | 104-158 | 10.943 |
| CpxR | 365-379 | 10.850 |
| TyrR | 116-137 | 10.096 |
| Fur | 254-268 | 9.104 |
| OxyR | 116-160 | 9.003 |
| FruR | 143-160 | 8.692 |
| CueR | 95-113 | 8.192 |
| Rob | 163-183 | 8.113 |
| TorR | 382-391 | 8.078 |
| NtrC | 230-246 | 8.073 |
| LacI | 378-398 | 7.973 |
| AraC | 374-391 | 7.782 |
| NarL | 384-390 | 7.680 |
| NarP | 299-305 | 7.550 |
| MetR | 359-382 | 7.450 |
| GadE | 129-148 | 7.010 |
| PurR | 161-176 | 6.987 |
| ModE | 338-364 | 6.823 |
| GntR | 374-393 | 6.779 |
| IdnR | 260-275 | 6.618 |
| NorR | 372-388 | 6.374 |
| DnaA | 355-363 | 6.374 |
| FadR | 63-79 | 5.734 |
| Ada | 361-388 | 5.499 |
| MalT | 286-295 | 5.043 |