| TF name | Position | PWM scan score |
| ArcA | 267-327 | 30.191 |
| CysB | 267-308 | 26.444 |
| FNR | 61-82 | 21.767 |
| PhoP | 66-82 | 20.606 |
| GadE | 63-82 | 16.934 |
| OxyR | 271-315 | 16.916 |
| CytR | 34-73 | 16.904 |
| GcvA | 72-100 | 16.827 |
| Fis | 61-81 | 16.760 |
| H-NS | 294-308 | 16.043 |
| FruR | 33-50 | 15.038 |
| Ada | 223-250 | 14.618 |
| Nac | 228-242 | 14.618 |
| TyrR | 260-281 | 14.608 |
| Rob | 23-43 | 14.546 |
| GntR | 280-299 | 14.371 |
| OmpR | 295-314 | 14.328 |
| IHF | 208-220 | 13.949 |
| Mlc | 277-299 | 13.081 |
| DeoR | 129-144 | 12.936 |
| PhoB | 209-228 | 12.826 |
| NagC | 62-84 | 12.377 |
| CRP | 268-289 | 12.327 |
| Lrp | 363-374 | 12.187 |
| AraC | 272-289 | 12.073 |
| DcuR | 223-277 | 11.759 |
| TorR | 271-280 | 11.715 |
| SoxS | 224-241 | 11.611 |
| GlpR | 287-306 | 11.401 |
| XylR | 207-224 | 11.379 |
| MarA | 28-48 | 11.030 |
| RcsB | 236-249 | 10.877 |
| ModE | 236-262 | 10.853 |
| UlaR | 256-275 | 10.771 |
| AgaR | 269-292 | 10.670 |
| ArgR | 232-247 | 10.579 |
| Fur | 288-302 | 10.169 |
| NarL | 84-90 | 10.130 |
| CpxR | 272-286 | 10.007 |
| MelR | 301-318 | 9.491 |
| MetR | 227-250 | 9.346 |
| PspF | 103-119 | 9.201 |
| ArgP | 117-129 | 9.165 |
| RhaS | 83-99 | 8.637 |
| MetJ | 10-17 | 8.249 |
| FhlA | 54-93 | 8.076 |
| NarP | 79-85 | 7.740 |
| PurR | 32-47 | 7.495 |
| FadR | 320-336 | 7.309 |
| UxuR | 28-45 | 6.798 |
| IdnR | 278-293 | 6.739 |
| LexA | 62-81 | 6.545 |
| NorR | 238-254 | 6.374 |
| MalT | 337-346 | 6.179 |
| DnaA | 147-155 | 5.559 |