| TF name | Position | PWM scan score |
| ArcA | 22-82 | 21.130 |
| DcuR | 336-390 | 16.812 |
| OmpR | 268-287 | 16.745 |
| GadE | 318-337 | 16.578 |
| Mlc | 338-360 | 15.662 |
| MarA | 52-72 | 14.977 |
| CRP | 99-120 | 14.645 |
| Fis | 271-291 | 13.763 |
| FNR | 7-28 | 13.500 |
| CysB | 324-365 | 13.285 |
| PhoP | 324-340 | 12.877 |
| SoxS | 189-206 | 12.588 |
| GlpR | 338-357 | 12.550 |
| H-NS | 186-200 | 12.325 |
| IHF | 116-128 | 11.477 |
| PspF | 342-358 | 10.816 |
| DeoR | 102-117 | 10.735 |
| ModE | 59-85 | 10.663 |
| UlaR | 62-81 | 10.554 |
| AgaR | 184-207 | 10.463 |
| Ada | 28-55 | 10.132 |
| GcvA | 264-292 | 10.107 |
| NagC | 310-332 | 10.080 |
| AraC | 13-30 | 9.998 |
| MetJ | 31-38 | 9.765 |
| PhoB | 338-357 | 9.595 |
| LexA | 142-161 | 9.471 |
| Nac | 273-287 | 9.388 |
| NarL | 47-53 | 9.333 |
| FadR | 129-145 | 9.264 |
| Lrp | 10-21 | 8.999 |
| Rob | 224-244 | 8.977 |
| GntR | 268-287 | 8.926 |
| TrpR | 194-211 | 8.706 |
| UxuR | 176-193 | 8.584 |
| RcsB | 16-29 | 8.563 |
| GalR | 266-281 | 8.511 |
| GalS | 266-281 | 8.511 |
| LacI | 100-120 | 8.416 |
| TyrR | 65-86 | 8.325 |
| MelR | 116-133 | 8.118 |
| CpxR | 103-117 | 8.027 |
| ArgP | 277-289 | 7.950 |
| ArgR | 62-77 | 7.936 |
| NorR | 6-22 | 7.801 |
| TorR | 293-302 | 7.730 |
| MetR | 172-195 | 7.517 |
| XylR | 64-81 | 7.341 |
| Fur | 160-174 | 7.204 |
| IdnR | 188-203 | 6.796 |
| RhaS | 250-266 | 6.776 |
| OxyR | 316-360 | 6.638 |
| MalT | 213-222 | 6.438 |
| DnaA | 343-351 | 6.265 |
| CytR | 318-357 | 6.196 |
| NarP | 358-364 | 5.283 |
| PurR | 93-108 | 5.272 |