| TF name | Position | PWM scan score |
| ArcA | 160-220 | 20.291 |
| GadE | 160-179 | 19.237 |
| CytR | 211-250 | 19.193 |
| PhoP | 226-242 | 18.729 |
| H-NS | 381-395 | 18.518 |
| MarA | 86-106 | 18.451 |
| FNR | 32-53 | 17.270 |
| OmpR | 98-117 | 16.440 |
| PhoB | 370-389 | 16.147 |
| TyrR | 193-214 | 15.098 |
| FruR | 210-227 | 13.956 |
| AgaR | 186-209 | 13.382 |
| CRP | 87-108 | 13.285 |
| NagC | 142-164 | 13.156 |
| LacI | 340-360 | 13.120 |
| CysB | 149-190 | 13.103 |
| GntR | 68-87 | 13.102 |
| XylR | 153-170 | 12.465 |
| Mlc | 186-208 | 12.296 |
| MetR | 145-168 | 12.284 |
| IHF | 32-44 | 12.072 |
| Nac | 24-38 | 11.696 |
| UxuR | 130-147 | 11.364 |
| Fis | 155-175 | 11.271 |
| MetJ | 83-90 | 11.100 |
| CpxR | 375-389 | 11.083 |
| Rob | 378-398 | 10.829 |
| Lrp | 158-169 | 10.713 |
| Ada | 198-225 | 10.582 |
| LexA | 140-159 | 10.346 |
| OxyR | 150-194 | 10.201 |
| IdnR | 214-229 | 10.187 |
| DeoR | 288-303 | 10.089 |
| GcvA | 289-317 | 10.078 |
| DnaA | 344-352 | 9.939 |
| RcsB | 378-391 | 9.921 |
| GlpR | 365-384 | 9.576 |
| NarP | 277-283 | 9.477 |
| ModE | 270-296 | 9.425 |
| AraC | 336-353 | 9.210 |
| NarL | 360-366 | 8.681 |
| ArgP | 97-109 | 8.671 |
| TorR | 339-348 | 8.594 |
| SoxS | 362-379 | 8.154 |
| UlaR | 98-117 | 8.133 |
| ArgR | 161-176 | 7.773 |
| PspF | 355-371 | 7.623 |
| NtrC | 353-369 | 7.591 |
| FhlA | 280-319 | 7.452 |
| MelR | 363-380 | 6.959 |
| RhaS | 180-196 | 6.843 |
| MalT | 236-245 | 6.447 |
| DcuR | 76-130 | 6.363 |
| Fur | 226-240 | 6.318 |