| TF name | Position | PWM scan score |
| ArcA | 314-374 | 26.419 |
| CytR | 123-162 | 16.949 |
| Fur | 119-133 | 15.708 |
| GlpR | 331-350 | 15.673 |
| FNR | 326-347 | 15.667 |
| Rob | 122-142 | 15.612 |
| OxyR | 108-152 | 14.812 |
| DcuR | 292-346 | 14.804 |
| OmpR | 124-143 | 14.707 |
| NorR | 334-350 | 14.422 |
| IHF | 314-326 | 14.383 |
| CRP | 323-344 | 14.182 |
| PhoB | 297-316 | 13.535 |
| H-NS | 175-189 | 13.268 |
| DeoR | 302-317 | 13.068 |
| MarA | 299-319 | 12.251 |
| CysB | 302-343 | 11.959 |
| Lrp | 329-340 | 11.342 |
| NagC | 130-152 | 11.168 |
| GalS | 310-325 | 10.633 |
| GalR | 310-325 | 10.633 |
| CpxR | 311-325 | 10.588 |
| PhoP | 330-346 | 10.550 |
| ArgP | 98-110 | 10.428 |
| Mlc | 128-150 | 10.381 |
| IdnR | 6-21 | 10.375 |
| AraC | 168-185 | 10.337 |
| Ada | 19-46 | 10.323 |
| PspF | 373-389 | 10.245 |
| Nac | 117-131 | 10.132 |
| DnaA | 334-342 | 10.111 |
| RcsB | 308-321 | 9.888 |
| TyrR | 329-350 | 9.603 |
| GcvA | 322-350 | 9.588 |
| Fis | 299-319 | 9.405 |
| XylR | 171-188 | 9.385 |
| AgaR | 316-339 | 9.253 |
| FruR | 311-328 | 9.232 |
| GadE | 336-355 | 9.219 |
| SoxS | 7-24 | 9.175 |
| GntR | 336-355 | 8.848 |
| UlaR | 104-123 | 8.735 |
| MetR | 117-140 | 8.650 |
| ModE | 167-193 | 8.376 |
| UxuR | 231-248 | 8.312 |
| PurR | 121-136 | 7.881 |
| MetJ | 320-327 | 7.802 |
| TorR | 317-326 | 7.462 |
| ArgR | 306-321 | 6.671 |
| NarL | 334-340 | 6.540 |
| FadR | 260-276 | 6.302 |
| CueR | 129-147 | 5.909 |
| RhaS | 97-113 | 5.266 |
| LacI | 197-217 | 5.233 |