| TF name | Position | PWM scan score |
| ArcA | 23-83 | 29.471 |
| GntR | 14-33 | 22.900 |
| H-NS | 49-63 | 20.183 |
| OxyR | 32-76 | 18.784 |
| GcvA | 46-74 | 18.620 |
| Fur | 44-58 | 18.528 |
| CytR | 37-76 | 18.174 |
| Fis | 44-64 | 18.148 |
| NagC | 53-75 | 17.867 |
| FNR | 44-65 | 16.580 |
| GadE | 49-68 | 16.439 |
| Mlc | 43-65 | 16.323 |
| GlpR | 51-70 | 16.312 |
| OmpR | 51-70 | 14.613 |
| AgaR | 42-65 | 14.429 |
| DeoR | 206-221 | 14.270 |
| GalS | 12-27 | 14.161 |
| GalR | 12-27 | 14.161 |
| ArgR | 9-24 | 13.490 |
| CRP | 51-72 | 13.154 |
| CpxR | 331-345 | 13.001 |
| PspF | 4-20 | 12.938 |
| UlaR | 230-249 | 12.863 |
| IHF | 359-371 | 12.602 |
| Nac | 198-212 | 12.593 |
| SoxS | 279-296 | 12.501 |
| CysB | 23-64 | 12.403 |
| PhoP | 45-61 | 12.306 |
| ModE | 44-70 | 11.673 |
| ArgP | 70-82 | 11.574 |
| Lrp | 49-60 | 11.188 |
| AraC | 23-40 | 11.090 |
| FadR | 125-141 | 11.012 |
| Rob | 339-359 | 10.852 |
| MetR | 183-206 | 10.801 |
| RcsB | 50-63 | 10.484 |
| MarA | 15-35 | 10.371 |
| PhoB | 31-50 | 10.198 |
| DcuR | 21-75 | 9.976 |
| XylR | 57-74 | 9.931 |
| FruR | 281-298 | 9.784 |
| TyrR | 43-64 | 9.709 |
| NarP | 23-29 | 9.680 |
| NarL | 45-51 | 9.129 |
| MelR | 49-66 | 8.869 |
| TorR | 194-203 | 8.796 |
| NorR | 270-286 | 8.704 |
| LacI | 240-260 | 7.704 |
| IdnR | 184-199 | 7.340 |
| DnaA | 73-81 | 7.032 |
| NtrC | 353-369 | 6.903 |
| UxuR | 184-201 | 6.882 |
| RhaS | 44-60 | 6.667 |
| MetJ | 7-14 | 6.292 |
| Ada | 163-190 | 5.613 |
| LexA | 180-199 | 5.543 |
| PurR | 348-363 | 5.053 |