| TF name | Position | PWM scan score |
| ArcA | 186-246 | 28.576 |
| GcvA | 193-221 | 20.771 |
| CRP | 238-259 | 20.017 |
| FNR | 241-262 | 18.325 |
| Fur | 241-255 | 17.692 |
| MarA | 191-211 | 16.966 |
| OmpR | 197-216 | 16.663 |
| AgaR | 240-263 | 16.323 |
| CysB | 214-255 | 15.957 |
| Mlc | 202-224 | 15.640 |
| GlpR | 240-259 | 15.543 |
| CytR | 197-236 | 15.279 |
| MetR | 183-206 | 14.412 |
| Fis | 230-250 | 14.077 |
| GadE | 185-204 | 13.997 |
| NagC | 232-254 | 13.738 |
| UlaR | 228-247 | 13.715 |
| PhoP | 22-38 | 13.675 |
| Ada | 208-235 | 13.275 |
| ArgR | 311-326 | 13.006 |
| NorR | 250-266 | 12.995 |
| H-NS | 238-252 | 12.919 |
| OxyR | 233-277 | 12.893 |
| AraC | 215-232 | 12.001 |
| DcuR | 203-257 | 11.484 |
| ArgP | 63-75 | 11.371 |
| IHF | 13-25 | 11.251 |
| Lrp | 8-19 | 11.181 |
| XylR | 246-263 | 11.060 |
| RcsB | 59-72 | 10.972 |
| IdnR | 30-45 | 10.731 |
| Nac | 229-243 | 10.689 |
| PhoB | 187-206 | 10.653 |
| CpxR | 363-377 | 10.558 |
| SoxS | 185-202 | 10.399 |
| ModE | 240-266 | 10.200 |
| UxuR | 356-373 | 9.934 |
| MelR | 247-264 | 9.464 |
| TyrR | 247-268 | 9.307 |
| Rob | 224-244 | 9.132 |
| TorR | 232-241 | 8.902 |
| DnaA | 205-213 | 8.866 |
| RhaS | 164-180 | 8.747 |
| LexA | 309-328 | 8.560 |
| MetJ | 315-322 | 8.251 |
| DeoR | 205-220 | 8.226 |
| NarL | 246-252 | 7.950 |
| PspF | 199-215 | 7.489 |
| GalR | 242-257 | 7.239 |
| GalS | 242-257 | 7.239 |
| NtrC | 59-75 | 7.093 |
| FadR | 108-124 | 6.880 |
| NarP | 221-227 | 6.657 |
| TrpR | 188-205 | 6.192 |
| MalT | 32-41 | 5.894 |
| GntR | 366-385 | 5.650 |
| PurR | 81-96 | 5.648 |
| LacI | 37-57 | 5.327 |