| TF name | Position | PWM scan score |
| ArcA | 322-382 | 32.447 |
| CysB | 177-218 | 22.733 |
| GcvA | 331-359 | 20.855 |
| AgaR | 202-225 | 18.884 |
| NagC | 176-198 | 18.600 |
| GadE | 228-247 | 18.563 |
| OxyR | 142-186 | 18.468 |
| PhoB | 357-376 | 18.399 |
| Fis | 328-348 | 18.345 |
| CytR | 334-373 | 17.952 |
| CRP | 113-134 | 17.181 |
| PhoP | 366-382 | 16.738 |
| OmpR | 84-103 | 16.461 |
| Fur | 328-342 | 16.153 |
| GntR | 113-132 | 15.989 |
| IHF | 357-369 | 14.549 |
| XylR | 82-99 | 14.140 |
| FNR | 338-359 | 14.101 |
| Rob | 344-364 | 14.030 |
| AraC | 122-139 | 13.830 |
| ModE | 74-100 | 13.713 |
| Ada | 191-218 | 13.631 |
| Nac | 345-359 | 13.587 |
| Mlc | 337-359 | 13.586 |
| H-NS | 85-99 | 13.409 |
| MetR | 213-236 | 13.266 |
| DeoR | 256-271 | 13.109 |
| UlaR | 167-186 | 12.870 |
| RcsB | 201-214 | 12.700 |
| TyrR | 328-349 | 12.472 |
| CpxR | 83-97 | 12.381 |
| LexA | 198-217 | 12.011 |
| SoxS | 209-226 | 11.909 |
| TorR | 368-377 | 11.884 |
| Lrp | 170-181 | 11.879 |
| DcuR | 320-374 | 11.860 |
| ArgR | 78-93 | 11.496 |
| NorR | 175-191 | 11.370 |
| ArgP | 240-252 | 10.856 |
| DnaA | 340-348 | 10.501 |
| GlpR | 121-140 | 10.342 |
| NarL | 75-81 | 10.130 |
| PspF | 190-206 | 10.111 |
| UxuR | 335-352 | 10.001 |
| IdnR | 94-109 | 9.116 |
| FhlA | 302-341 | 8.574 |
| FadR | 342-358 | 8.166 |
| MarA | 326-346 | 8.132 |
| MetJ | 182-189 | 8.047 |
| PurR | 290-305 | 7.787 |
| RhaS | 131-147 | 7.605 |
| MelR | 266-283 | 7.439 |
| LacI | 347-367 | 6.459 |
| NtrC | 201-217 | 6.237 |