| TF name | Position | PWM scan score |
| ArcA | 43-103 | 32.469 |
| CytR | 192-231 | 22.901 |
| OxyR | 47-91 | 21.557 |
| DcuR | 209-263 | 19.481 |
| UxuR | 215-232 | 19.016 |
| CysB | 77-118 | 18.785 |
| NagC | 59-81 | 17.062 |
| OmpR | 81-100 | 16.009 |
| CRP | 117-138 | 15.534 |
| ArgR | 76-91 | 15.350 |
| Mlc | 120-142 | 14.009 |
| CpxR | 347-361 | 13.974 |
| H-NS | 213-227 | 13.349 |
| UlaR | 73-92 | 13.295 |
| AgaR | 116-139 | 13.267 |
| TyrR | 76-97 | 13.232 |
| IHF | 114-126 | 13.201 |
| GlpR | 119-138 | 13.055 |
| GntR | 65-84 | 12.770 |
| FNR | 200-221 | 12.284 |
| XylR | 251-268 | 12.149 |
| Nac | 72-86 | 11.838 |
| MelR | 19-36 | 11.824 |
| Fis | 121-141 | 11.606 |
| Fur | 73-87 | 11.363 |
| MarA | 102-122 | 11.313 |
| IdnR | 20-35 | 11.201 |
| SoxS | 68-85 | 11.159 |
| CaiF | 60-104 | 11.139 |
| PhoB | 75-94 | 11.001 |
| FhlA | 124-163 | 10.765 |
| Lrp | 114-125 | 10.731 |
| AraC | 207-224 | 10.678 |
| FruR | 120-137 | 10.610 |
| Rob | 191-211 | 10.601 |
| DeoR | 62-77 | 10.481 |
| ArgP | 116-128 | 10.433 |
| RcsB | 33-46 | 10.415 |
| PspF | 255-271 | 10.336 |
| NarL | 305-311 | 10.241 |
| MetR | 71-94 | 9.682 |
| DnaA | 122-130 | 9.483 |
| NarP | 249-255 | 9.477 |
| PhoP | 330-346 | 9.410 |
| LacI | 378-398 | 9.410 |
| TorR | 94-103 | 9.287 |
| GadE | 201-220 | 9.097 |
| GcvA | 110-138 | 9.091 |
| ModE | 314-340 | 8.745 |
| LexA | 69-88 | 8.260 |
| FadR | 209-225 | 7.497 |
| NorR | 208-224 | 7.371 |
| MetJ | 133-140 | 6.347 |
| Ada | 67-94 | 6.305 |
| MalT | 361-370 | 6.247 |
| NtrC | 109-125 | 5.983 |