| TF name | Position | PWM scan score |
| ArcA | 126-186 | 28.539 |
| OxyR | 46-90 | 18.175 |
| NorR | 228-244 | 17.269 |
| OmpR | 133-152 | 16.397 |
| NagC | 68-90 | 16.361 |
| CRP | 74-95 | 16.193 |
| Mlc | 127-149 | 16.086 |
| CpxR | 69-83 | 15.283 |
| Fur | 196-210 | 13.991 |
| Rob | 139-159 | 13.517 |
| UxuR | 234-251 | 13.137 |
| GadE | 70-89 | 13.003 |
| CysB | 215-256 | 12.981 |
| MetR | 192-215 | 12.750 |
| FNR | 229-250 | 12.678 |
| UlaR | 267-286 | 12.626 |
| GcvA | 9-37 | 12.441 |
| AgaR | 57-80 | 12.412 |
| CytR | 118-157 | 12.241 |
| ArgR | 140-155 | 11.701 |
| Fis | 127-147 | 11.687 |
| H-NS | 151-165 | 11.388 |
| PhoP | 138-154 | 11.379 |
| Nac | 172-186 | 11.347 |
| PspF | 291-307 | 11.219 |
| ArgP | 301-313 | 11.180 |
| AraC | 7-24 | 10.973 |
| IHF | 144-156 | 10.852 |
| DeoR | 330-345 | 10.730 |
| LacI | 336-356 | 10.719 |
| Lrp | 71-82 | 10.709 |
| PhoB | 290-309 | 10.517 |
| DcuR | 144-198 | 10.299 |
| NtrC | 107-123 | 9.748 |
| IdnR | 235-250 | 9.509 |
| Ada | 113-140 | 9.427 |
| MelR | 142-159 | 9.077 |
| GntR | 274-293 | 9.030 |
| SoxS | 138-155 | 8.910 |
| XylR | 302-319 | 8.374 |
| PurR | 197-212 | 8.294 |
| GlpR | 126-145 | 8.209 |
| DnaA | 240-248 | 8.092 |
| RcsB | 235-248 | 7.997 |
| NarL | 302-308 | 7.995 |
| TorR | 237-246 | 7.901 |
| CueR | 378-396 | 7.786 |
| GalR | 31-46 | 7.432 |
| GalS | 31-46 | 7.432 |
| LexA | 191-210 | 7.249 |
| MarA | 43-63 | 6.678 |
| NarP | 303-309 | 6.591 |
| ModE | 223-249 | 6.355 |
| MalT | 321-330 | 6.078 |
| TyrR | 197-218 | 5.982 |
| FruR | 245-262 | 5.820 |
| MetJ | 58-65 | 5.175 |