| TF name | Position | PWM scan score |
| ArcA | 274-334 | 27.168 |
| FNR | 238-259 | 19.720 |
| CytR | 299-338 | 19.125 |
| MarA | 334-354 | 18.729 |
| CysB | 298-339 | 18.320 |
| GadE | 238-257 | 16.028 |
| Fur | 306-320 | 15.384 |
| IHF | 297-309 | 15.164 |
| OmpR | 318-337 | 14.755 |
| OxyR | 336-380 | 14.449 |
| PhoP | 327-343 | 14.435 |
| Mlc | 314-336 | 14.416 |
| Fis | 244-264 | 13.952 |
| Nac | 15-29 | 13.633 |
| PhoB | 256-275 | 13.529 |
| AgaR | 299-322 | 13.358 |
| XylR | 247-264 | 12.759 |
| TyrR | 307-328 | 12.723 |
| NagC | 323-345 | 12.706 |
| CRP | 335-356 | 12.556 |
| GlpR | 333-352 | 12.427 |
| CpxR | 297-311 | 12.353 |
| Rob | 297-317 | 12.216 |
| H-NS | 340-354 | 12.177 |
| SoxS | 53-70 | 11.808 |
| UlaR | 146-165 | 11.587 |
| UxuR | 255-272 | 11.092 |
| ArgR | 293-308 | 10.775 |
| ModE | 207-233 | 10.724 |
| DnaA | 236-244 | 10.218 |
| RcsB | 298-311 | 10.216 |
| GcvA | 226-254 | 9.956 |
| MelR | 225-242 | 9.933 |
| LacI | 285-305 | 9.863 |
| NarP | 180-186 | 9.746 |
| PspF | 204-220 | 9.745 |
| DeoR | 337-352 | 9.514 |
| Lrp | 337-348 | 9.513 |
| FruR | 176-193 | 9.349 |
| MetR | 214-237 | 9.072 |
| DcuR | 306-360 | 8.969 |
| AraC | 85-102 | 8.754 |
| GntR | 106-125 | 8.660 |
| Ada | 222-249 | 8.346 |
| GalR | 119-134 | 8.186 |
| GalS | 119-134 | 8.186 |
| FhlA | 200-239 | 7.786 |
| ArgP | 240-252 | 7.588 |
| NarL | 240-246 | 7.483 |
| FadR | 55-71 | 7.444 |
| IdnR | 327-342 | 6.635 |
| MetJ | 238-245 | 6.375 |
| LexA | 68-87 | 6.001 |
| PurR | 189-204 | 5.852 |
| CueR | 57-75 | 5.523 |
| TorR | 233-242 | 5.171 |
| NorR | 337-353 | 5.068 |