| TF name | Position | PWM scan score |
| ArcA | 248-308 | 31.492 |
| CysB | 239-280 | 22.133 |
| Mlc | 357-379 | 19.148 |
| OmpR | 372-391 | 18.082 |
| NagC | 359-381 | 17.122 |
| CytR | 242-281 | 17.120 |
| FNR | 210-231 | 16.028 |
| H-NS | 370-384 | 15.770 |
| GcvA | 357-385 | 15.543 |
| DcuR | 250-304 | 15.228 |
| GntR | 244-263 | 14.660 |
| Nac | 362-376 | 14.578 |
| Fis | 210-230 | 14.467 |
| CRP | 363-384 | 14.204 |
| PhoB | 362-381 | 14.120 |
| DeoR | 359-374 | 14.025 |
| AgaR | 248-271 | 13.909 |
| OxyR | 219-263 | 13.883 |
| ArgR | 217-232 | 13.715 |
| PhoP | 295-311 | 13.712 |
| IHF | 241-253 | 13.076 |
| ArgP | 267-279 | 12.280 |
| UlaR | 61-80 | 11.695 |
| GlpR | 66-85 | 11.607 |
| GadE | 362-381 | 11.573 |
| RcsB | 367-380 | 11.531 |
| TyrR | 332-353 | 11.279 |
| LexA | 300-319 | 10.613 |
| Ada | 348-375 | 10.431 |
| SoxS | 217-234 | 10.390 |
| IdnR | 239-254 | 10.382 |
| Lrp | 73-84 | 10.288 |
| MetR | 362-385 | 10.255 |
| Fur | 364-378 | 9.885 |
| PspF | 285-301 | 9.718 |
| XylR | 156-173 | 9.631 |
| Rob | 217-237 | 9.403 |
| MarA | 215-235 | 9.363 |
| DnaA | 271-279 | 8.951 |
| NarL | 274-280 | 8.728 |
| FruR | 269-286 | 8.389 |
| NarP | 179-185 | 7.740 |
| CpxR | 352-366 | 7.717 |
| MetJ | 16-23 | 7.497 |
| UxuR | 141-158 | 6.979 |
| MelR | 288-305 | 6.869 |
| AraC | 241-258 | 6.565 |
| MalT | 241-250 | 5.903 |
| FhlA | 354-393 | 5.796 |
| ModE | 249-275 | 5.769 |
| NorR | 63-79 | 5.746 |
| PurR | 175-190 | 5.517 |
| NtrC | 97-113 | 5.472 |
| TorR | 178-187 | 5.205 |
| RhaS | 173-189 | 5.141 |