| TF name | Position | PWM scan score |
| ArcA | 81-141 | 19.054 |
| PhoB | 46-65 | 15.875 |
| CRP | 300-321 | 15.873 |
| ArgR | 306-321 | 15.663 |
| RcsB | 56-69 | 15.485 |
| CysB | 346-387 | 15.238 |
| TyrR | 94-115 | 13.914 |
| NagC | 300-322 | 13.754 |
| H-NS | 58-72 | 13.308 |
| FNR | 126-147 | 13.126 |
| CytR | 98-137 | 13.092 |
| UlaR | 142-161 | 12.695 |
| Lrp | 55-66 | 12.177 |
| AgaR | 202-225 | 12.151 |
| ModE | 204-230 | 12.087 |
| PhoP | 55-71 | 11.756 |
| Fis | 300-320 | 11.616 |
| GlpR | 302-321 | 11.599 |
| IHF | 292-304 | 11.484 |
| OmpR | 299-318 | 11.395 |
| MelR | 317-334 | 11.339 |
| MarA | 279-299 | 11.152 |
| PspF | 369-385 | 10.880 |
| GadE | 297-316 | 10.819 |
| DcuR | 106-160 | 10.812 |
| Ada | 77-104 | 10.686 |
| Nac | 369-383 | 10.570 |
| GcvA | 52-80 | 10.426 |
| NorR | 83-99 | 10.403 |
| DnaA | 106-114 | 9.958 |
| CpxR | 375-389 | 9.785 |
| DeoR | 374-389 | 9.768 |
| LexA | 40-59 | 9.609 |
| LacI | 355-375 | 9.514 |
| OxyR | 343-387 | 9.482 |
| AraC | 50-67 | 9.258 |
| Mlc | 62-84 | 9.158 |
| SoxS | 305-322 | 8.921 |
| IdnR | 363-378 | 8.871 |
| Rob | 340-360 | 8.464 |
| XylR | 122-139 | 8.345 |
| PurR | 12-27 | 8.042 |
| Fur | 234-248 | 7.963 |
| NarL | 77-83 | 7.950 |
| MetR | 47-70 | 7.737 |
| TorR | 42-51 | 7.699 |
| NarP | 108-114 | 7.400 |
| FadR | 67-83 | 6.749 |
| UxuR | 204-221 | 6.432 |
| MetJ | 90-97 | 6.292 |
| ArgP | 305-317 | 6.236 |
| MalT | 84-93 | 5.875 |
| NtrC | 75-91 | 5.432 |
| GntR | 242-261 | 5.064 |