| TF name | Position | PWM scan score |
| ArcA | 276-336 | 29.506 |
| OxyR | 271-315 | 21.566 |
| CysB | 294-335 | 19.240 |
| DcuR | 307-361 | 19.018 |
| OmpR | 332-351 | 17.504 |
| UlaR | 343-362 | 15.744 |
| FNR | 320-341 | 15.326 |
| NagC | 320-342 | 15.109 |
| PhoP | 294-310 | 14.832 |
| IHF | 329-341 | 13.909 |
| Rob | 331-351 | 13.881 |
| CytR | 197-236 | 13.744 |
| CpxR | 332-346 | 13.446 |
| TyrR | 294-315 | 13.390 |
| Fis | 358-378 | 13.299 |
| H-NS | 210-224 | 13.169 |
| NorR | 287-303 | 12.706 |
| MarA | 370-390 | 12.510 |
| GadE | 333-352 | 12.459 |
| AgaR | 195-218 | 12.456 |
| Fur | 294-308 | 12.369 |
| PhoB | 368-387 | 11.836 |
| SoxS | 138-155 | 11.476 |
| Nac | 357-371 | 11.458 |
| Lrp | 199-210 | 11.369 |
| ModE | 192-218 | 11.250 |
| UxuR | 326-343 | 11.173 |
| GcvA | 311-339 | 11.109 |
| AraC | 144-161 | 11.027 |
| Mlc | 294-316 | 10.811 |
| ArgP | 363-375 | 10.729 |
| NtrC | 98-114 | 10.599 |
| GntR | 207-226 | 10.425 |
| PspF | 151-167 | 10.272 |
| RcsB | 137-150 | 10.228 |
| CRP | 292-313 | 10.106 |
| MetR | 273-296 | 9.943 |
| IdnR | 294-309 | 9.321 |
| MelR | 310-327 | 9.115 |
| DeoR | 322-337 | 8.981 |
| MalT | 189-198 | 8.859 |
| ArgR | 308-323 | 8.838 |
| NarL | 166-172 | 8.685 |
| NarP | 333-339 | 8.306 |
| XylR | 83-100 | 8.224 |
| Ada | 183-210 | 8.195 |
| GlpR | 357-376 | 8.062 |
| MetJ | 326-333 | 7.925 |
| FhlA | 205-244 | 7.618 |
| TorR | 247-256 | 7.334 |
| GalS | 159-174 | 7.143 |
| GalR | 159-174 | 7.143 |
| LexA | 351-370 | 7.142 |
| LacI | 165-185 | 7.076 |
| DnaA | 214-222 | 6.017 |