| TF name | Position | PWM scan score |
| ArcA | 227-287 | 31.438 |
| Ada | 95-122 | 23.005 |
| CysB | 180-221 | 19.112 |
| AgaR | 100-123 | 18.006 |
| OmpR | 271-290 | 16.998 |
| NagC | 266-288 | 16.574 |
| PhoP | 270-286 | 15.845 |
| ArgR | 236-251 | 15.235 |
| FNR | 269-290 | 14.856 |
| Rob | 271-291 | 14.691 |
| CytR | 185-224 | 14.563 |
| TyrR | 101-122 | 14.369 |
| FhlA | 202-241 | 14.288 |
| Fis | 367-387 | 13.874 |
| H-NS | 246-260 | 13.411 |
| GcvA | 257-285 | 13.373 |
| GadE | 208-227 | 13.275 |
| PhoB | 66-85 | 13.112 |
| Mlc | 265-287 | 12.903 |
| GlpR | 357-376 | 12.767 |
| SoxS | 271-288 | 12.258 |
| UlaR | 104-123 | 11.914 |
| CRP | 230-251 | 11.726 |
| Lrp | 205-216 | 11.708 |
| IHF | 239-251 | 11.658 |
| ArgP | 376-388 | 11.548 |
| MetR | 172-195 | 11.335 |
| Nac | 207-221 | 11.255 |
| MelR | 220-237 | 11.212 |
| Fur | 257-271 | 10.840 |
| PurR | 286-301 | 10.663 |
| NorR | 100-116 | 10.487 |
| OxyR | 93-137 | 10.474 |
| MetJ | 194-201 | 10.363 |
| DeoR | 361-376 | 10.220 |
| MarA | 257-277 | 10.071 |
| TorR | 110-119 | 9.263 |
| RcsB | 105-118 | 9.213 |
| NarL | 242-248 | 9.197 |
| DcuR | 250-304 | 9.174 |
| LacI | 164-184 | 9.148 |
| ModE | 243-269 | 8.689 |
| UxuR | 325-342 | 8.675 |
| IdnR | 103-118 | 7.874 |
| XylR | 328-345 | 7.740 |
| CpxR | 235-249 | 7.697 |
| PspF | 236-252 | 7.499 |
| AraC | 158-175 | 7.448 |
| NarP | 56-62 | 7.122 |
| LexA | 277-296 | 7.084 |
| GntR | 264-283 | 6.971 |
| FadR | 143-159 | 6.837 |
| RhaS | 117-133 | 6.716 |