| TF name | Position | PWM scan score |
| ArcA | 129-189 | 25.353 |
| GadE | 359-378 | 24.437 |
| GlpR | 146-165 | 19.722 |
| FNR | 141-162 | 18.375 |
| CRP | 138-159 | 17.730 |
| CytR | 149-188 | 16.663 |
| CysB | 357-398 | 16.445 |
| Fur | 141-155 | 15.924 |
| TyrR | 260-281 | 15.539 |
| Fis | 6-26 | 14.772 |
| XylR | 188-205 | 14.580 |
| DeoR | 177-192 | 14.017 |
| IHF | 147-159 | 14.008 |
| Nac | 139-153 | 13.925 |
| OxyR | 325-369 | 13.512 |
| ArgP | 379-391 | 13.455 |
| Mlc | 131-153 | 13.168 |
| PhoB | 137-156 | 12.742 |
| PhoP | 185-201 | 12.180 |
| H-NS | 246-260 | 12.080 |
| OmpR | 169-188 | 11.853 |
| GcvA | 366-394 | 11.764 |
| Lrp | 375-386 | 11.586 |
| MelR | 261-278 | 11.464 |
| Rob | 126-146 | 11.246 |
| DcuR | 152-206 | 11.165 |
| CpxR | 177-191 | 11.126 |
| NagC | 248-270 | 10.809 |
| TorR | 47-56 | 10.786 |
| MarA | 369-389 | 10.767 |
| ArgR | 363-378 | 10.493 |
| AgaR | 45-68 | 10.478 |
| PspF | 285-301 | 10.225 |
| GntR | 9-28 | 10.176 |
| NorR | 266-282 | 9.859 |
| UlaR | 132-151 | 9.665 |
| FadR | 208-224 | 9.624 |
| ModE | 360-386 | 9.618 |
| AraC | 222-239 | 9.605 |
| IdnR | 249-264 | 9.492 |
| SoxS | 351-368 | 8.986 |
| Ada | 228-255 | 8.890 |
| RcsB | 147-160 | 8.851 |
| MetR | 337-360 | 8.743 |
| PurR | 262-277 | 7.817 |
| NarL | 187-193 | 7.791 |
| UxuR | 171-188 | 7.560 |
| NarP | 54-60 | 7.347 |
| NtrC | 238-254 | 6.982 |
| LacI | 284-304 | 6.942 |
| MetJ | 267-274 | 6.590 |
| DnaA | 16-24 | 5.855 |
| LexA | 208-227 | 5.415 |
| GalS | 1-16 | 5.364 |
| GalR | 1-16 | 5.364 |
| FruR | 314-331 | 5.353 |
| MalT | 79-88 | 5.061 |