| TF name | Position | PWM scan score |
| ArcA | 240-300 | 24.903 |
| CysB | 245-286 | 16.137 |
| PhoP | 279-295 | 16.122 |
| UxuR | 232-249 | 15.994 |
| XylR | 79-96 | 15.567 |
| Fur | 140-154 | 15.529 |
| OmpR | 259-278 | 14.418 |
| ArgR | 184-199 | 13.915 |
| SoxS | 17-34 | 13.725 |
| H-NS | 261-275 | 13.688 |
| PhoB | 136-155 | 13.584 |
| CRP | 266-287 | 13.457 |
| FNR | 81-102 | 13.449 |
| GadE | 273-292 | 13.389 |
| CytR | 228-267 | 13.304 |
| GcvA | 77-105 | 13.282 |
| GntR | 137-156 | 13.175 |
| DcuR | 51-105 | 13.088 |
| MarA | 187-207 | 12.523 |
| PurR | 294-309 | 12.449 |
| Rob | 132-152 | 12.101 |
| GalS | 135-150 | 11.606 |
| GalR | 135-150 | 11.606 |
| Fis | 203-223 | 11.351 |
| GlpR | 311-330 | 11.243 |
| Nac | 79-93 | 11.091 |
| IHF | 81-93 | 10.971 |
| OxyR | 222-266 | 10.853 |
| ArgP | 24-36 | 10.729 |
| TorR | 80-89 | 10.649 |
| NagC | 265-287 | 10.552 |
| PspF | 77-93 | 10.514 |
| DeoR | 184-199 | 10.435 |
| IdnR | 267-282 | 10.214 |
| Mlc | 229-251 | 9.846 |
| Lrp | 25-36 | 9.736 |
| CpxR | 75-89 | 9.669 |
| RcsB | 321-334 | 9.442 |
| RhaS | 140-156 | 9.442 |
| ModE | 367-393 | 9.356 |
| AraC | 304-321 | 9.154 |
| NarL | 141-147 | 9.129 |
| UlaR | 73-92 | 8.979 |
| MelR | 211-228 | 8.806 |
| CueR | 244-262 | 8.753 |
| LexA | 367-386 | 8.566 |
| Ada | 67-94 | 8.544 |
| NarP | 146-152 | 8.509 |
| MalT | 324-333 | 8.463 |
| FhlA | 49-88 | 8.335 |
| AgaR | 133-156 | 7.993 |
| NorR | 226-242 | 7.623 |
| LacI | 60-80 | 7.399 |
| FadR | 105-121 | 6.596 |
| MetJ | 346-353 | 6.590 |
| DnaA | 201-209 | 6.252 |
| TyrR | 130-151 | 6.016 |
| MetR | 177-200 | 5.644 |