| TF name | Position | PWM scan score |
| OxyR | 87-131 | 22.641 |
| PhoP | 127-143 | 19.203 |
| ArcA | 101-161 | 17.047 |
| AraC | 155-172 | 12.919 |
| Fur | 88-102 | 11.885 |
| DeoR | 98-113 | 11.643 |
| MarA | 10-30 | 11.375 |
| Rob | 18-38 | 11.365 |
| Mlc | 97-119 | 11.100 |
| GadE | 100-119 | 11.005 |
| RhaS | 256-272 | 10.790 |
| SoxS | 363-380 | 10.610 |
| CysB | 116-157 | 10.368 |
| NarL | 93-99 | 10.130 |
| UxuR | 155-172 | 10.011 |
| PspF | 155-171 | 9.708 |
| IHF | 118-130 | 9.707 |
| Lrp | 136-147 | 9.695 |
| MetJ | 335-342 | 9.682 |
| Fis | 133-153 | 9.510 |
| UlaR | 113-132 | 9.376 |
| PhoB | 325-344 | 9.367 |
| CytR | 352-391 | 8.874 |
| Ada | 120-147 | 8.816 |
| AgaR | 115-138 | 8.713 |
| FNR | 370-391 | 8.662 |
| CpxR | 134-148 | 8.597 |
| H-NS | 112-126 | 8.223 |
| Nac | 273-287 | 8.128 |
| GlpR | 219-238 | 8.007 |
| OmpR | 374-393 | 7.895 |
| NorR | 274-290 | 7.710 |
| ModE | 281-307 | 7.694 |
| GcvA | 246-274 | 7.655 |
| XylR | 16-33 | 7.610 |
| MelR | 374-391 | 7.451 |
| LacI | 220-240 | 7.439 |
| CRP | 137-158 | 7.268 |
| FruR | 119-136 | 7.125 |
| NarP | 3-9 | 7.078 |
| DnaA | 286-294 | 6.997 |
| IdnR | 369-384 | 6.984 |
| NtrC | 231-247 | 6.642 |
| ArgP | 18-30 | 6.616 |
| RcsB | 121-134 | 6.478 |
| LexA | 315-334 | 6.441 |
| TorR | 55-64 | 6.038 |
| ArgR | 233-248 | 5.841 |
| TyrR | 367-388 | 5.480 |
| NagC | 104-126 | 5.467 |
| MetR | 43-66 | 5.311 |
| TrpR | 367-384 | 5.271 |