| TF name | Position | PWM scan score |
| ArcA | 248-308 | 32.516 |
| CysB | 250-291 | 23.733 |
| CytR | 315-354 | 21.183 |
| OmpR | 273-292 | 20.467 |
| NagC | 209-231 | 20.161 |
| LexA | 374-393 | 19.329 |
| Mlc | 275-297 | 17.974 |
| ModE | 195-221 | 17.830 |
| AgaR | 301-324 | 17.762 |
| GadE | 281-300 | 16.990 |
| DcuR | 252-306 | 16.517 |
| CRP | 276-297 | 16.366 |
| MetR | 280-303 | 16.189 |
| OxyR | 327-371 | 16.015 |
| FNR | 276-297 | 15.962 |
| Fis | 251-271 | 15.791 |
| Rob | 285-305 | 15.595 |
| H-NS | 281-295 | 15.442 |
| GntR | 274-293 | 14.978 |
| IdnR | 239-254 | 14.861 |
| PhoP | 87-103 | 14.750 |
| MarA | 365-385 | 14.631 |
| ArgP | 326-338 | 14.245 |
| Nac | 296-310 | 13.922 |
| IHF | 321-333 | 13.711 |
| FruR | 74-91 | 13.640 |
| XylR | 96-113 | 13.593 |
| TyrR | 321-342 | 13.326 |
| Ada | 258-285 | 13.154 |
| RcsB | 244-257 | 13.045 |
| Fur | 307-321 | 13.006 |
| TorR | 349-358 | 12.673 |
| AraC | 331-348 | 12.654 |
| Lrp | 352-363 | 12.601 |
| CpxR | 174-188 | 11.827 |
| TrpR | 354-371 | 11.765 |
| GlpR | 137-156 | 11.619 |
| GcvA | 200-228 | 11.532 |
| SoxS | 33-50 | 11.474 |
| PhoB | 380-399 | 11.398 |
| MelR | 17-34 | 11.056 |
| DeoR | 323-338 | 11.016 |
| CaiF | 172-216 | 10.687 |
| ArgR | 323-338 | 10.678 |
| NorR | 205-221 | 10.487 |
| UlaR | 123-142 | 10.438 |
| NarL | 251-257 | 10.377 |
| PspF | 70-86 | 10.185 |
| UxuR | 275-292 | 9.914 |
| DnaA | 281-289 | 9.331 |
| NarP | 94-100 | 8.594 |
| GalS | 98-113 | 8.102 |
| GalR | 98-113 | 8.102 |
| MetJ | 193-200 | 7.996 |
| FadR | 116-132 | 7.025 |
| LacI | 102-122 | 6.207 |
| MalT | 171-180 | 5.675 |
| FhlA | 345-384 | 5.567 |