| TF name | Position | PWM scan score |
| ArcA | 338-398 | 34.176 |
| DcuR | 299-353 | 24.944 |
| AgaR | 307-330 | 23.566 |
| CytR | 347-386 | 23.452 |
| OmpR | 346-365 | 22.976 |
| GcvA | 344-372 | 21.837 |
| CysB | 345-386 | 19.803 |
| OxyR | 297-341 | 18.006 |
| NagC | 329-351 | 17.744 |
| MarA | 102-122 | 16.480 |
| Mlc | 344-366 | 15.945 |
| MetR | 332-355 | 15.515 |
| CRP | 362-383 | 15.429 |
| RcsB | 363-376 | 15.167 |
| UlaR | 339-358 | 15.147 |
| PhoP | 195-211 | 14.716 |
| ModE | 354-380 | 14.647 |
| GadE | 347-366 | 14.475 |
| H-NS | 61-75 | 14.435 |
| PhoB | 340-359 | 13.646 |
| FNR | 348-369 | 13.396 |
| IHF | 344-356 | 13.009 |
| Fis | 224-244 | 12.609 |
| PspF | 246-262 | 12.394 |
| SoxS | 338-355 | 12.377 |
| ArgP | 258-270 | 12.063 |
| MelR | 342-359 | 11.928 |
| Ada | 59-86 | 11.918 |
| Lrp | 108-119 | 11.915 |
| TyrR | 344-365 | 11.408 |
| AraC | 336-353 | 11.405 |
| GntR | 1-20 | 11.250 |
| Rob | 363-383 | 11.022 |
| Fur | 224-238 | 10.808 |
| ArgR | 301-316 | 10.590 |
| Nac | 361-375 | 10.086 |
| GlpR | 370-389 | 9.926 |
| NarL | 370-376 | 9.580 |
| NarP | 123-129 | 9.543 |
| CpxR | 347-361 | 9.508 |
| NtrC | 238-254 | 9.349 |
| XylR | 253-270 | 8.678 |
| UxuR | 247-264 | 8.131 |
| GalS | 219-234 | 7.973 |
| GalR | 219-234 | 7.973 |
| PurR | 57-72 | 7.802 |
| DeoR | 355-370 | 7.592 |
| NorR | 347-363 | 7.096 |
| LexA | 256-275 | 7.092 |
| RhaS | 65-81 | 6.948 |
| TorR | 308-317 | 6.790 |
| IdnR | 145-160 | 6.289 |
| DnaA | 262-270 | 6.252 |
| FruR | 227-244 | 5.857 |
| CaiF | 280-324 | 5.405 |
| MalT | 247-256 | 5.382 |
| FhlA | 81-120 | 5.268 |
| FadR | 358-374 | 5.070 |