| TF name | Position | PWM scan score |
| ArcA | 18-78 | 21.876 |
| FNR | 218-239 | 16.604 |
| CytR | 213-252 | 16.239 |
| NagC | 358-380 | 15.333 |
| PhoP | 61-77 | 14.233 |
| ArgR | 115-130 | 13.869 |
| Rob | 210-230 | 13.672 |
| MarA | 129-149 | 13.141 |
| IHF | 113-125 | 13.094 |
| CRP | 285-306 | 12.887 |
| OmpR | 280-299 | 12.494 |
| CysB | 97-138 | 12.486 |
| Nac | 10-24 | 12.283 |
| XylR | 133-150 | 11.747 |
| Mlc | 351-373 | 11.659 |
| PhoB | 272-291 | 11.577 |
| DnaA | 287-295 | 11.552 |
| H-NS | 321-335 | 11.530 |
| Fis | 282-302 | 11.272 |
| OxyR | 262-306 | 11.130 |
| GadE | 214-233 | 10.992 |
| DeoR | 220-235 | 10.964 |
| SoxS | 362-379 | 10.818 |
| RcsB | 280-293 | 10.769 |
| IdnR | 73-88 | 10.758 |
| GalS | 13-28 | 10.744 |
| GalR | 13-28 | 10.744 |
| CaiF | 320-364 | 10.727 |
| FruR | 348-365 | 10.698 |
| AgaR | 53-76 | 10.681 |
| GcvA | 276-304 | 10.539 |
| DcuR | 266-320 | 10.419 |
| UxuR | 56-73 | 10.001 |
| TorR | 110-119 | 9.956 |
| CpxR | 240-254 | 9.938 |
| MetJ | 18-25 | 9.765 |
| Ada | 51-78 | 9.229 |
| Lrp | 135-146 | 9.210 |
| UlaR | 71-90 | 9.126 |
| LexA | 339-358 | 8.616 |
| TyrR | 101-122 | 8.552 |
| NarL | 124-130 | 8.481 |
| ArgP | 322-334 | 8.419 |
| AraC | 49-66 | 8.064 |
| GlpR | 320-339 | 7.964 |
| NarP | 36-42 | 7.740 |
| GntR | 9-28 | 7.191 |
| NorR | 241-257 | 7.079 |
| Fur | 338-352 | 6.939 |
| RhaS | 60-76 | 6.858 |
| ModE | 239-265 | 6.712 |
| MalT | 207-216 | 6.697 |
| FhlA | 104-143 | 6.557 |
| MetR | 341-364 | 6.027 |
| FadR | 51-67 | 5.953 |
| PspF | 56-72 | 5.706 |