| TF name | Position | PWM scan score |
| ArcA | 294-354 | 33.705 |
| PspF | 201-217 | 22.168 |
| CysB | 188-229 | 20.457 |
| MetR | 311-334 | 20.186 |
| CRP | 312-333 | 19.549 |
| DeoR | 316-331 | 18.631 |
| Mlc | 185-207 | 18.471 |
| AgaR | 105-128 | 17.909 |
| NagC | 310-332 | 17.768 |
| GadE | 311-330 | 17.688 |
| FNR | 17-38 | 17.613 |
| OmpR | 310-329 | 17.229 |
| MelR | 249-266 | 17.091 |
| H-NS | 203-217 | 16.495 |
| ModE | 315-341 | 16.320 |
| ArgP | 330-342 | 15.687 |
| Rob | 225-245 | 15.604 |
| IHF | 291-303 | 15.571 |
| MarA | 320-340 | 15.091 |
| CytR | 71-110 | 14.942 |
| Fis | 185-205 | 14.800 |
| DcuR | 24-78 | 14.465 |
| NorR | 178-194 | 14.086 |
| OxyR | 313-357 | 13.977 |
| GlpR | 151-170 | 13.965 |
| IdnR | 355-370 | 13.951 |
| GcvA | 322-350 | 13.797 |
| Nac | 93-107 | 13.664 |
| PhoB | 322-341 | 12.607 |
| UlaR | 181-200 | 12.273 |
| Fur | 320-334 | 11.791 |
| AraC | 89-106 | 11.679 |
| Ada | 292-319 | 11.670 |
| RcsB | 246-259 | 11.343 |
| ArgR | 323-338 | 11.063 |
| Lrp | 248-259 | 11.036 |
| CpxR | 253-267 | 10.872 |
| UxuR | 40-57 | 10.736 |
| PhoP | 252-268 | 10.610 |
| GntR | 347-366 | 10.599 |
| TyrR | 185-206 | 10.438 |
| TorR | 142-151 | 9.987 |
| GalS | 165-180 | 9.965 |
| GalR | 165-180 | 9.965 |
| SoxS | 356-373 | 9.764 |
| DnaA | 187-195 | 9.246 |
| LacI | 169-189 | 8.997 |
| FruR | 323-340 | 8.726 |
| XylR | 289-306 | 8.352 |
| MetJ | 98-105 | 8.047 |
| NarL | 248-254 | 7.950 |
| NarP | 374-380 | 6.295 |
| NtrC | 199-215 | 5.761 |
| MalT | 122-131 | 5.498 |