| TF name | Position | PWM scan score |
| GadE | 228-247 | 20.918 |
| OmpR | 228-247 | 17.618 |
| Rob | 51-71 | 16.132 |
| NagC | 296-318 | 15.562 |
| ArcA | 214-274 | 15.368 |
| CRP | 229-250 | 14.982 |
| Mlc | 312-334 | 14.794 |
| NorR | 144-160 | 14.583 |
| IdnR | 376-391 | 14.515 |
| CysB | 293-334 | 14.150 |
| GcvA | 38-66 | 14.023 |
| PhoB | 217-236 | 14.004 |
| H-NS | 43-57 | 13.770 |
| MarA | 44-64 | 13.634 |
| RcsB | 227-240 | 13.169 |
| IHF | 235-247 | 13.155 |
| CytR | 338-377 | 12.885 |
| GlpR | 315-334 | 12.692 |
| FNR | 36-57 | 12.652 |
| SoxS | 30-47 | 12.522 |
| UlaR | 371-390 | 11.801 |
| AgaR | 366-389 | 11.735 |
| ArgR | 181-196 | 11.672 |
| TyrR | 39-60 | 11.618 |
| Lrp | 229-240 | 11.418 |
| TorR | 321-330 | 11.342 |
| PhoP | 327-343 | 11.178 |
| Fis | 146-166 | 10.955 |
| ModE | 229-255 | 10.854 |
| FadR | 254-270 | 10.609 |
| ArgP | 228-240 | 10.433 |
| LacI | 123-143 | 10.410 |
| OxyR | 38-82 | 10.095 |
| GntR | 368-387 | 9.764 |
| MelR | 363-380 | 9.600 |
| NarL | 231-237 | 9.580 |
| Nac | 321-335 | 9.535 |
| UxuR | 94-111 | 9.467 |
| NtrC | 11-27 | 9.357 |
| DnaA | 324-332 | 9.246 |
| MalT | 7-16 | 9.042 |
| Ada | 165-192 | 9.000 |
| Fur | 304-318 | 8.643 |
| AraC | 67-84 | 8.163 |
| MetR | 323-346 | 8.118 |
| MetJ | 185-192 | 8.065 |
| CpxR | 315-329 | 8.019 |
| DeoR | 79-94 | 7.991 |
| PspF | 292-308 | 7.133 |
| XylR | 114-131 | 6.739 |
| GalS | 346-361 | 6.062 |
| GalR | 346-361 | 6.062 |
| FruR | 40-57 | 5.361 |