| TF name | Position | PWM scan score |
| ArcA | 12-72 | 17.650 |
| IdnR | 208-223 | 17.023 |
| GalS | 346-361 | 14.699 |
| GalR | 346-361 | 14.699 |
| FNR | 368-389 | 14.669 |
| UxuR | 92-109 | 14.047 |
| ArgR | 241-256 | 13.418 |
| CytR | 359-398 | 12.564 |
| MetR | 40-63 | 12.528 |
| NagC | 367-389 | 12.316 |
| Lrp | 242-253 | 10.967 |
| CRP | 207-228 | 10.703 |
| GadE | 220-239 | 10.675 |
| OmpR | 158-177 | 10.558 |
| NarL | 286-292 | 10.377 |
| Mlc | 365-387 | 10.267 |
| AgaR | 48-71 | 10.196 |
| MetJ | 168-175 | 10.171 |
| FadR | 189-205 | 10.052 |
| OxyR | 220-264 | 10.023 |
| Nac | 91-105 | 10.000 |
| PurR | 346-361 | 9.689 |
| Rob | 224-244 | 9.596 |
| H-NS | 380-394 | 9.524 |
| DnaA | 27-35 | 9.464 |
| DcuR | 173-227 | 9.449 |
| CueR | 292-310 | 9.307 |
| ArgP | 288-300 | 9.305 |
| Fis | 139-159 | 9.269 |
| TorR | 218-227 | 9.030 |
| GntR | 99-118 | 8.916 |
| MelR | 12-29 | 8.828 |
| MarA | 42-62 | 8.632 |
| CpxR | 97-111 | 8.631 |
| AraC | 378-395 | 8.584 |
| PhoP | 212-228 | 8.544 |
| UlaR | 24-43 | 8.348 |
| IHF | 355-367 | 8.346 |
| CysB | 85-126 | 8.300 |
| PspF | 237-253 | 8.281 |
| RcsB | 364-377 | 8.281 |
| DeoR | 45-60 | 8.229 |
| SoxS | 19-36 | 7.838 |
| PhoB | 4-23 | 7.828 |
| LacI | 365-385 | 7.550 |
| XylR | 64-81 | 6.783 |
| FruR | 83-100 | 6.725 |
| TyrR | 126-147 | 6.709 |
| NorR | 52-68 | 6.565 |
| Fur | 237-251 | 6.313 |
| MalT | 210-219 | 6.236 |
| GcvA | 16-44 | 6.235 |
| LexA | 376-395 | 6.161 |
| Ada | 348-375 | 5.791 |
| ModE | 171-197 | 5.519 |
| GlpR | 302-321 | 5.466 |