| TF name | Position | PWM scan score |
| ArcA | 39-99 | 36.995 |
| CysB | 66-107 | 24.130 |
| OxyR | 59-103 | 22.343 |
| DcuR | 171-225 | 17.255 |
| OmpR | 63-82 | 17.193 |
| CytR | 167-206 | 16.960 |
| TyrR | 72-93 | 16.732 |
| ModE | 65-91 | 16.198 |
| H-NS | 63-77 | 16.135 |
| IHF | 72-84 | 16.026 |
| FNR | 63-84 | 15.613 |
| NtrC | 368-384 | 15.285 |
| NagC | 62-84 | 14.959 |
| PhoP | 59-75 | 14.683 |
| CpxR | 60-74 | 14.680 |
| Mlc | 79-101 | 14.440 |
| MetR | 49-72 | 14.328 |
| Fis | 364-384 | 14.240 |
| AgaR | 75-98 | 14.040 |
| CRP | 65-86 | 13.889 |
| GadE | 273-292 | 12.545 |
| FhlA | 140-179 | 12.196 |
| UxuR | 65-82 | 11.878 |
| RcsB | 132-145 | 11.577 |
| PhoB | 148-167 | 11.516 |
| MelR | 127-144 | 11.507 |
| MarA | 57-77 | 11.408 |
| ArgR | 69-84 | 11.246 |
| DeoR | 69-84 | 10.823 |
| GcvA | 187-215 | 10.513 |
| RhaS | 299-315 | 10.273 |
| FruR | 69-86 | 10.259 |
| Lrp | 57-68 | 10.204 |
| Nac | 136-150 | 10.130 |
| GlpR | 355-374 | 10.043 |
| Ada | 93-120 | 9.944 |
| GntR | 212-231 | 9.899 |
| Rob | 61-81 | 9.805 |
| PurR | 210-225 | 9.731 |
| AraC | 169-186 | 9.670 |
| NorR | 98-114 | 9.587 |
| IdnR | 66-81 | 9.509 |
| UlaR | 54-73 | 9.129 |
| PspF | 371-387 | 9.013 |
| NarL | 142-148 | 8.932 |
| SoxS | 178-195 | 8.726 |
| ArgP | 139-151 | 8.610 |
| MalT | 233-242 | 8.578 |
| Fur | 73-87 | 8.025 |
| XylR | 75-92 | 7.781 |
| LacI | 64-84 | 7.362 |
| CaiF | 41-85 | 7.287 |
| DnaA | 182-190 | 7.045 |
| TorR | 76-85 | 6.790 |
| NarP | 215-221 | 6.176 |
| FadR | 341-357 | 5.867 |
| GalS | 309-324 | 5.655 |
| GalR | 309-324 | 5.655 |