| TF name | Position | PWM scan score |
| ArcA | 278-338 | 20.470 |
| DcuR | 319-373 | 18.427 |
| CRP | 377-398 | 15.731 |
| Mlc | 329-351 | 15.603 |
| CysB | 340-381 | 15.384 |
| DeoR | 308-323 | 14.128 |
| MarA | 358-378 | 13.979 |
| OmpR | 302-321 | 13.793 |
| XylR | 214-231 | 13.544 |
| H-NS | 302-316 | 13.225 |
| IdnR | 155-170 | 12.900 |
| GcvA | 46-74 | 11.872 |
| Rob | 161-181 | 11.473 |
| OxyR | 331-375 | 11.255 |
| IHF | 68-80 | 11.194 |
| FNR | 331-352 | 11.137 |
| CytR | 315-354 | 10.910 |
| Nac | 274-288 | 10.607 |
| CpxR | 309-323 | 10.093 |
| Fis | 277-297 | 9.893 |
| MetJ | 80-87 | 9.765 |
| NorR | 58-74 | 9.503 |
| PhoP | 70-86 | 9.123 |
| DnaA | 78-86 | 9.103 |
| ArgP | 64-76 | 8.674 |
| RcsB | 132-145 | 8.598 |
| MelR | 318-335 | 8.569 |
| AraC | 244-261 | 8.515 |
| Lrp | 339-350 | 8.452 |
| ArgR | 361-376 | 8.370 |
| RhaS | 339-355 | 8.259 |
| SoxS | 187-204 | 8.170 |
| UlaR | 318-337 | 8.044 |
| FadR | 133-149 | 7.737 |
| GadE | 190-209 | 7.651 |
| GlpR | 330-349 | 7.577 |
| UxuR | 163-180 | 7.520 |
| TyrR | 242-263 | 7.298 |
| MetR | 318-341 | 7.213 |
| FhlA | 214-253 | 7.207 |
| PhoB | 303-322 | 7.170 |
| PurR | 117-132 | 6.767 |
| AgaR | 75-98 | 6.680 |
| NarL | 233-239 | 6.496 |
| GalS | 118-133 | 6.460 |
| GalR | 118-133 | 6.460 |
| NarP | 69-75 | 6.195 |
| NagC | 218-240 | 6.192 |
| TorR | 58-67 | 6.035 |
| ModE | 83-109 | 5.869 |
| LacI | 123-143 | 5.861 |
| PspF | 373-389 | 5.793 |
| FruR | 308-325 | 5.507 |