| TF name | Position | PWM scan score |
| ArcA | 191-251 | 20.079 |
| OmpR | 218-237 | 17.709 |
| CytR | 270-309 | 16.263 |
| PhoP | 222-238 | 15.745 |
| UlaR | 269-288 | 14.979 |
| Nac | 281-295 | 14.759 |
| Ada | 253-280 | 14.359 |
| CysB | 215-256 | 14.339 |
| H-NS | 215-229 | 14.175 |
| FadR | 329-345 | 13.849 |
| Fis | 218-238 | 13.825 |
| PhoB | 208-227 | 13.621 |
| SoxS | 98-115 | 13.409 |
| FNR | 222-243 | 13.217 |
| Rob | 95-115 | 12.723 |
| GlpR | 200-219 | 12.154 |
| GadE | 225-244 | 11.828 |
| DcuR | 213-267 | 11.614 |
| IdnR | 134-149 | 11.426 |
| CRP | 219-240 | 11.275 |
| Lrp | 269-280 | 11.061 |
| NagC | 218-240 | 10.949 |
| ArgR | 213-228 | 10.598 |
| XylR | 4-21 | 10.449 |
| MetJ | 279-286 | 10.363 |
| Fur | 226-240 | 10.207 |
| GcvA | 214-242 | 10.007 |
| ArgP | 234-246 | 9.791 |
| MelR | 292-309 | 9.748 |
| CpxR | 106-120 | 9.661 |
| Mlc | 200-222 | 9.500 |
| AraC | 104-121 | 9.415 |
| IHF | 104-116 | 9.363 |
| NarL | 234-240 | 9.240 |
| OxyR | 203-247 | 9.158 |
| TyrR | 273-294 | 9.061 |
| MarA | 216-236 | 8.420 |
| NorR | 143-159 | 8.254 |
| RcsB | 230-243 | 8.188 |
| DnaA | 340-348 | 7.924 |
| AgaR | 349-372 | 7.821 |
| NarP | 334-340 | 7.806 |
| DeoR | 204-219 | 7.576 |
| PspF | 214-230 | 7.499 |
| UxuR | 218-235 | 7.154 |
| TorR | 333-342 | 6.965 |
| MalT | 33-42 | 6.952 |
| FruR | 365-382 | 6.723 |
| RhaS | 12-28 | 6.108 |
| CueR | 132-150 | 5.496 |
| ModE | 150-176 | 5.361 |
| LexA | 267-286 | 5.267 |