| TF name | Position | PWM scan score |
| ArcA | 140-200 | 23.946 |
| CytR | 248-287 | 21.977 |
| RcsB | 346-359 | 18.176 |
| H-NS | 211-225 | 17.693 |
| CRP | 346-367 | 15.975 |
| CysB | 161-202 | 15.520 |
| DnaA | 291-299 | 15.414 |
| FNR | 349-370 | 15.305 |
| GadE | 155-174 | 15.235 |
| DeoR | 89-104 | 15.118 |
| PhoP | 154-170 | 14.382 |
| Nac | 100-114 | 14.287 |
| GlpR | 149-168 | 13.853 |
| Mlc | 149-171 | 13.812 |
| XylR | 64-81 | 13.480 |
| UxuR | 157-174 | 13.147 |
| NagC | 180-202 | 13.103 |
| IHF | 187-199 | 12.229 |
| MarA | 150-170 | 12.088 |
| DcuR | 122-176 | 11.967 |
| OmpR | 144-163 | 11.777 |
| TyrR | 184-205 | 11.766 |
| Fis | 157-177 | 11.660 |
| PhoB | 158-177 | 11.561 |
| Lrp | 342-353 | 11.480 |
| OxyR | 48-92 | 11.032 |
| IdnR | 323-338 | 10.946 |
| ArgP | 344-356 | 10.868 |
| Rob | 209-229 | 10.676 |
| NorR | 378-394 | 10.675 |
| CpxR | 246-260 | 10.645 |
| TorR | 180-189 | 10.468 |
| PspF | 308-324 | 10.363 |
| MelR | 147-164 | 8.999 |
| FadR | 97-113 | 8.982 |
| ModE | 334-360 | 8.942 |
| MetR | 72-95 | 8.926 |
| FhlA | 254-293 | 8.881 |
| NtrC | 206-222 | 8.428 |
| UlaR | 247-266 | 8.363 |
| SoxS | 357-374 | 8.269 |
| Fur | 168-182 | 8.005 |
| GcvA | 142-170 | 7.974 |
| NarL | 155-161 | 7.791 |
| LexA | 52-71 | 7.492 |
| MetJ | 91-98 | 7.244 |
| AgaR | 266-289 | 7.215 |
| PurR | 305-320 | 6.915 |
| ArgR | 137-152 | 6.892 |
| AraC | 205-222 | 6.680 |
| RhaS | 364-380 | 6.420 |
| LacI | 273-293 | 6.378 |
| NarP | 102-108 | 6.295 |
| MalT | 48-57 | 6.226 |
| Ada | 248-275 | 6.130 |
| GalS | 359-374 | 6.005 |
| GalR | 359-374 | 6.005 |
| GntR | 85-104 | 5.779 |
| CueR | 112-130 | 5.533 |