| TF name | Position | PWM scan score |
| ArcA | 201-261 | 30.433 |
| CysB | 193-234 | 25.634 |
| OxyR | 181-225 | 20.050 |
| CytR | 240-279 | 20.044 |
| NagC | 95-117 | 19.260 |
| AgaR | 147-170 | 18.645 |
| OmpR | 105-124 | 16.087 |
| FNR | 350-371 | 15.983 |
| H-NS | 108-122 | 15.612 |
| GlpR | 215-234 | 15.490 |
| CpxR | 105-119 | 14.993 |
| MelR | 233-250 | 14.863 |
| Fis | 233-253 | 14.684 |
| PhoB | 288-307 | 14.568 |
| MetR | 286-309 | 14.313 |
| XylR | 85-102 | 14.242 |
| Nac | 372-386 | 13.459 |
| Mlc | 102-124 | 13.196 |
| IHF | 288-300 | 13.185 |
| CRP | 215-236 | 12.869 |
| IdnR | 245-260 | 12.712 |
| ArgR | 114-129 | 12.711 |
| GntR | 105-124 | 12.362 |
| GadE | 220-239 | 11.764 |
| PhoP | 227-243 | 11.612 |
| DcuR | 229-283 | 11.574 |
| PspF | 83-99 | 11.246 |
| MarA | 251-271 | 10.968 |
| UlaR | 1-20 | 10.967 |
| SoxS | 211-228 | 10.889 |
| DeoR | 164-179 | 10.534 |
| Lrp | 347-358 | 10.476 |
| Fur | 374-388 | 10.456 |
| RcsB | 1-14 | 10.422 |
| ModE | 350-376 | 10.099 |
| Rob | 250-270 | 10.056 |
| UxuR | 285-302 | 10.001 |
| AraC | 133-150 | 9.861 |
| TorR | 367-376 | 9.277 |
| Ada | 308-335 | 8.618 |
| NorR | 283-299 | 8.365 |
| GcvA | 113-141 | 8.350 |
| NarL | 165-171 | 8.131 |
| ArgP | 251-263 | 7.747 |
| NtrC | 261-277 | 6.948 |
| TyrR | 194-215 | 6.753 |
| FruR | 185-202 | 6.691 |
| FadR | 229-245 | 6.682 |
| LexA | 324-343 | 6.527 |
| GalR | 307-322 | 6.335 |
| GalS | 307-322 | 6.335 |
| DnaA | 62-70 | 6.265 |
| LacI | 82-102 | 5.700 |
| MetJ | 105-112 | 5.479 |
| MalT | 380-389 | 5.207 |
| PurR | 317-332 | 5.012 |