| TF name | Position | PWM scan score |
| ArcA | 327-387 | 29.871 |
| CysB | 355-396 | 21.628 |
| Mlc | 369-391 | 19.179 |
| DeoR | 186-201 | 18.598 |
| CRP | 369-390 | 16.072 |
| CytR | 179-218 | 15.306 |
| NagC | 372-394 | 15.231 |
| AgaR | 263-286 | 15.219 |
| GalR | 68-83 | 14.905 |
| GalS | 68-83 | 14.905 |
| Rob | 188-208 | 14.866 |
| UlaR | 334-353 | 14.832 |
| OmpR | 108-127 | 14.455 |
| GcvA | 175-203 | 13.700 |
| ArgR | 186-201 | 13.686 |
| Fis | 183-203 | 13.647 |
| OxyR | 354-398 | 13.569 |
| IdnR | 79-94 | 13.444 |
| PhoB | 331-350 | 13.319 |
| PurR | 68-83 | 13.101 |
| MarA | 248-268 | 13.005 |
| TyrR | 362-383 | 12.820 |
| Lrp | 366-377 | 12.818 |
| IHF | 150-162 | 12.776 |
| ModE | 265-291 | 12.502 |
| SoxS | 294-311 | 12.498 |
| RcsB | 153-166 | 12.366 |
| PhoP | 152-168 | 12.291 |
| NorR | 221-237 | 12.192 |
| ArgP | 368-380 | 11.988 |
| FNR | 350-371 | 11.931 |
| FadR | 107-123 | 11.674 |
| H-NS | 180-194 | 11.544 |
| LexA | 366-385 | 11.410 |
| GlpR | 299-318 | 11.182 |
| CpxR | 374-388 | 11.142 |
| XylR | 348-365 | 10.826 |
| MetR | 145-168 | 10.391 |
| Nac | 101-115 | 10.339 |
| GadE | 112-131 | 10.271 |
| FhlA | 56-95 | 9.761 |
| TorR | 365-374 | 9.678 |
| LacI | 287-307 | 9.608 |
| AraC | 269-286 | 9.583 |
| GntR | 368-387 | 9.396 |
| MelR | 27-44 | 9.157 |
| DcuR | 302-356 | 9.059 |
| NtrC | 197-213 | 9.041 |
| Ada | 341-368 | 8.880 |
| NarL | 248-254 | 8.840 |
| Fur | 216-230 | 8.707 |
| TrpR | 63-80 | 7.839 |
| UxuR | 118-135 | 7.768 |
| DnaA | 149-157 | 7.751 |
| PspF | 358-374 | 7.650 |
| RhaS | 225-241 | 6.510 |
| FruR | 186-203 | 6.227 |
| NarP | 328-334 | 5.708 |