| TF name | Position | PWM scan score |
| ArcA | 297-357 | 24.663 |
| CytR | 321-360 | 20.527 |
| OxyR | 325-369 | 17.746 |
| Fur | 72-86 | 17.258 |
| GadE | 254-273 | 16.627 |
| CysB | 225-266 | 16.295 |
| Nac | 343-357 | 16.058 |
| DcuR | 34-88 | 15.872 |
| CRP | 336-357 | 15.309 |
| Fis | 336-356 | 15.219 |
| OmpR | 228-247 | 15.188 |
| H-NS | 342-356 | 14.749 |
| GlpR | 344-363 | 14.652 |
| AraC | 51-68 | 14.597 |
| AgaR | 329-352 | 14.187 |
| SoxS | 260-277 | 13.473 |
| DeoR | 57-72 | 13.048 |
| RcsB | 51-64 | 12.968 |
| PhoB | 76-95 | 12.905 |
| Mlc | 80-102 | 12.772 |
| FNR | 82-103 | 12.593 |
| ArgP | 346-358 | 12.092 |
| GcvA | 215-243 | 11.907 |
| IHF | 342-354 | 11.571 |
| LexA | 249-268 | 11.522 |
| TyrR | 336-357 | 11.187 |
| UlaR | 324-343 | 11.045 |
| PhoP | 194-210 | 11.028 |
| Lrp | 339-350 | 10.843 |
| Rob | 252-272 | 10.797 |
| NagC | 245-267 | 10.778 |
| PspF | 339-355 | 10.514 |
| MarA | 259-279 | 10.102 |
| ModE | 331-357 | 10.051 |
| Ada | 60-87 | 9.961 |
| DnaA | 49-57 | 9.809 |
| XylR | 227-244 | 9.570 |
| IdnR | 81-96 | 9.499 |
| MelR | 69-86 | 9.366 |
| TrpR | 341-358 | 9.285 |
| ArgR | 251-266 | 8.912 |
| NorR | 223-239 | 8.704 |
| NarL | 177-183 | 8.439 |
| CpxR | 339-353 | 8.117 |
| MetJ | 51-58 | 8.010 |
| TorR | 56-65 | 7.643 |
| FadR | 229-245 | 7.003 |
| FruR | 288-305 | 6.812 |
| MetR | 322-345 | 6.684 |
| GntR | 60-79 | 6.532 |
| NarP | 351-357 | 5.708 |
| UxuR | 343-360 | 5.643 |