| TF name | Position | PWM scan score |
| ArcA | 260-320 | 28.152 |
| CytR | 252-291 | 19.977 |
| GcvA | 363-391 | 18.948 |
| GadE | 131-150 | 18.168 |
| IHF | 282-294 | 16.313 |
| CysB | 283-324 | 16.237 |
| Rob | 348-368 | 15.683 |
| FNR | 315-336 | 15.434 |
| Fur | 294-308 | 15.269 |
| AgaR | 141-164 | 15.038 |
| OxyR | 132-176 | 14.610 |
| UxuR | 287-304 | 14.564 |
| NagC | 130-152 | 14.551 |
| OmpR | 316-335 | 14.515 |
| MarA | 91-111 | 14.462 |
| PhoP | 281-297 | 14.415 |
| FruR | 34-51 | 14.352 |
| Fis | 276-296 | 14.206 |
| TyrR | 127-148 | 14.131 |
| Nac | 367-381 | 13.937 |
| RcsB | 316-329 | 13.766 |
| ArgR | 164-179 | 13.575 |
| ModE | 276-302 | 13.163 |
| UlaR | 134-153 | 13.034 |
| H-NS | 166-180 | 12.709 |
| CRP | 321-342 | 12.344 |
| Lrp | 129-140 | 12.330 |
| XylR | 272-289 | 12.143 |
| Mlc | 353-375 | 11.644 |
| MetR | 292-315 | 11.629 |
| PspF | 38-54 | 11.350 |
| IdnR | 371-386 | 11.292 |
| DeoR | 374-389 | 11.150 |
| TorR | 161-170 | 11.105 |
| DnaA | 281-289 | 10.817 |
| ArgP | 238-250 | 10.769 |
| MelR | 360-377 | 10.596 |
| PhoB | 366-385 | 10.313 |
| GlpR | 380-399 | 10.171 |
| CpxR | 34-48 | 9.774 |
| NorR | 263-279 | 9.520 |
| AraC | 283-300 | 9.508 |
| SoxS | 356-373 | 8.869 |
| NarL | 278-284 | 8.685 |
| CaiF | 269-313 | 8.239 |
| TrpR | 134-151 | 8.203 |
| LacI | 167-187 | 8.104 |
| NarP | 294-300 | 7.740 |
| RhaS | 213-229 | 7.220 |
| MalT | 51-60 | 7.217 |
| NtrC | 84-100 | 6.881 |
| GntR | 324-343 | 6.804 |
| FhlA | 95-134 | 6.762 |
| MetJ | 174-181 | 6.153 |
| DcuR | 106-160 | 5.554 |
| LexA | 73-92 | 5.239 |
| PurR | 140-155 | 5.122 |