| TF name | Position | PWM scan score |
| ArcA | 333-393 | 37.691 |
| CysB | 272-313 | 28.901 |
| OxyR | 354-398 | 24.911 |
| OmpR | 372-391 | 19.322 |
| Ada | 268-295 | 18.811 |
| GadE | 332-351 | 17.594 |
| PhoB | 343-362 | 17.420 |
| ModE | 345-371 | 17.171 |
| GntR | 294-313 | 16.744 |
| Rob | 283-303 | 16.557 |
| AgaR | 264-287 | 16.111 |
| CytR | 331-370 | 15.723 |
| Mlc | 371-393 | 15.519 |
| PhoP | 167-183 | 15.514 |
| GcvA | 268-296 | 15.159 |
| DcuR | 268-322 | 14.120 |
| ArgR | 278-293 | 13.888 |
| XylR | 27-44 | 13.811 |
| DeoR | 292-307 | 13.750 |
| RcsB | 372-385 | 13.704 |
| GlpR | 170-189 | 13.675 |
| IHF | 291-303 | 13.616 |
| H-NS | 343-357 | 13.481 |
| Nac | 300-314 | 13.458 |
| NagC | 227-249 | 13.299 |
| Fis | 299-319 | 13.168 |
| AraC | 366-383 | 13.156 |
| FNR | 275-296 | 13.148 |
| MetR | 318-341 | 13.089 |
| SoxS | 137-154 | 12.897 |
| CRP | 372-393 | 12.575 |
| PspF | 10-26 | 11.622 |
| CpxR | 6-20 | 11.326 |
| Lrp | 374-385 | 11.285 |
| MarA | 371-391 | 10.586 |
| IdnR | 289-304 | 9.865 |
| TyrR | 282-303 | 9.548 |
| UxuR | 361-378 | 9.457 |
| ArgP | 348-360 | 9.406 |
| NorR | 285-301 | 9.248 |
| Fur | 144-158 | 9.201 |
| UlaR | 305-324 | 9.179 |
| NarL | 359-365 | 8.951 |
| PurR | 309-324 | 8.763 |
| DnaA | 115-123 | 8.280 |
| TorR | 30-39 | 7.963 |
| FadR | 308-324 | 7.924 |
| NarP | 31-37 | 7.740 |
| NtrC | 223-239 | 7.281 |
| LacI | 243-263 | 7.177 |
| MalT | 86-95 | 7.036 |
| MetJ | 275-282 | 6.590 |
| RhaS | 37-53 | 6.415 |
| MelR | 307-324 | 6.309 |
| TrpR | 148-165 | 6.196 |
| FhlA | 268-307 | 5.990 |
| FruR | 291-308 | 5.052 |