| TF name | Position | PWM scan score |
| ArcA | 29-89 | 24.392 |
| RcsB | 66-79 | 16.758 |
| OmpR | 64-83 | 14.943 |
| AgaR | 52-75 | 14.461 |
| Ada | 50-77 | 13.735 |
| CysB | 26-67 | 13.661 |
| DnaA | 289-297 | 13.567 |
| UxuR | 368-385 | 13.419 |
| AraC | 291-308 | 13.127 |
| Fis | 338-358 | 13.121 |
| IHF | 59-71 | 12.940 |
| Fur | 56-70 | 12.590 |
| Lrp | 59-70 | 12.562 |
| XylR | 62-79 | 12.270 |
| CRP | 53-74 | 12.265 |
| PhoP | 343-359 | 12.228 |
| NagC | 66-88 | 12.121 |
| FNR | 56-77 | 11.920 |
| MetJ | 30-37 | 11.820 |
| Nac | 70-84 | 11.675 |
| ArgP | 344-356 | 11.519 |
| H-NS | 62-76 | 11.467 |
| TyrR | 36-57 | 11.417 |
| ArgR | 48-63 | 10.930 |
| MarA | 56-76 | 10.876 |
| TorR | 161-170 | 9.980 |
| NorR | 281-297 | 9.681 |
| DcuR | 119-173 | 9.472 |
| NarL | 61-67 | 9.376 |
| GntR | 63-82 | 9.293 |
| Mlc | 62-84 | 9.182 |
| MalT | 306-315 | 9.045 |
| FruR | 372-389 | 8.988 |
| PhoB | 56-75 | 8.915 |
| OxyR | 45-89 | 8.843 |
| IdnR | 55-70 | 8.767 |
| CytR | 345-384 | 8.724 |
| Rob | 366-386 | 8.679 |
| ModE | 253-279 | 8.194 |
| UlaR | 52-71 | 8.041 |
| NarP | 56-62 | 7.965 |
| MetR | 54-77 | 7.624 |
| GcvA | 56-84 | 7.068 |
| PspF | 56-72 | 6.945 |
| FhlA | 239-278 | 6.939 |
| MelR | 277-294 | 6.910 |
| GadE | 66-85 | 6.788 |
| SoxS | 350-367 | 6.346 |
| DeoR | 243-258 | 6.312 |
| GlpR | 245-264 | 6.020 |
| CpxR | 60-74 | 5.993 |
| PurR | 375-390 | 5.200 |