| TF name | Position | PWM scan score |
| GadE | 59-78 | 16.956 |
| ArcA | 164-224 | 16.645 |
| XylR | 284-301 | 16.383 |
| Nac | 163-177 | 16.355 |
| DeoR | 81-96 | 15.880 |
| NagC | 131-153 | 15.853 |
| OmpR | 183-202 | 14.232 |
| UlaR | 45-64 | 13.850 |
| RcsB | 165-178 | 13.712 |
| Fur | 236-250 | 13.609 |
| PhoB | 7-26 | 12.826 |
| AgaR | 124-147 | 12.679 |
| ModE | 273-299 | 12.545 |
| SoxS | 279-296 | 12.310 |
| Lrp | 80-91 | 12.001 |
| PhoP | 10-26 | 11.719 |
| IHF | 285-297 | 11.648 |
| GntR | 183-202 | 11.564 |
| GcvA | 285-313 | 11.540 |
| AraC | 264-281 | 11.432 |
| Mlc | 127-149 | 11.351 |
| Ada | 350-377 | 11.136 |
| DnaA | 372-380 | 10.881 |
| TorR | 56-65 | 10.851 |
| TyrR | 126-147 | 10.695 |
| MetR | 60-83 | 10.672 |
| CRP | 257-278 | 10.536 |
| CysB | 137-178 | 10.489 |
| FNR | 171-192 | 10.457 |
| LacI | 242-262 | 10.266 |
| NarL | 172-178 | 10.130 |
| H-NS | 125-139 | 9.954 |
| CytR | 269-308 | 9.833 |
| Rob | 285-305 | 9.766 |
| ArgP | 169-181 | 9.302 |
| MelR | 49-66 | 9.028 |
| Fis | 273-293 | 8.938 |
| ArgR | 280-295 | 8.601 |
| NtrC | 122-138 | 8.411 |
| NarP | 23-29 | 8.372 |
| CpxR | 197-211 | 8.316 |
| MarA | 144-164 | 8.165 |
| LexA | 364-383 | 7.803 |
| MetJ | 207-214 | 7.802 |
| OxyR | 252-296 | 7.714 |
| RhaS | 26-42 | 7.575 |
| UxuR | 256-273 | 7.399 |
| MalT | 354-363 | 7.217 |
| GlpR | 134-153 | 6.735 |
| PurR | 237-252 | 6.514 |
| FruR | 346-363 | 6.400 |
| IdnR | 178-193 | 5.923 |
| FhlA | 207-246 | 5.578 |
| NorR | 187-203 | 5.568 |
| PspF | 287-303 | 5.367 |