| TF name | Position | PWM scan score |
| Mlc | 276-298 | 20.749 |
| ArcA | 76-136 | 20.408 |
| SoxS | 105-122 | 17.865 |
| Fis | 82-102 | 17.666 |
| CytR | 89-128 | 16.558 |
| GadE | 367-386 | 14.391 |
| H-NS | 80-94 | 13.964 |
| FNR | 372-393 | 13.490 |
| MetR | 151-174 | 12.866 |
| OmpR | 118-137 | 12.858 |
| ModE | 133-159 | 12.745 |
| MelR | 4-21 | 12.077 |
| FhlA | 213-252 | 12.056 |
| PhoB | 90-109 | 11.960 |
| IHF | 377-389 | 11.857 |
| NagC | 101-123 | 11.568 |
| ArgR | 373-388 | 11.560 |
| Fur | 265-279 | 11.286 |
| CRP | 118-139 | 11.284 |
| GntR | 118-137 | 11.169 |
| PhoP | 87-103 | 11.051 |
| RcsB | 165-178 | 10.977 |
| Ada | 292-319 | 10.951 |
| CysB | 94-135 | 10.745 |
| Nac | 219-233 | 10.397 |
| MetJ | 338-345 | 10.229 |
| Lrp | 274-285 | 10.201 |
| AgaR | 100-123 | 9.972 |
| MarA | 103-123 | 9.884 |
| GlpR | 123-142 | 9.861 |
| Rob | 164-184 | 9.540 |
| CpxR | 107-121 | 9.479 |
| ArgP | 380-392 | 9.409 |
| NorR | 331-347 | 9.409 |
| NtrC | 289-305 | 9.342 |
| NarP | 367-373 | 8.509 |
| FruR | 150-167 | 8.416 |
| DnaA | 172-180 | 8.112 |
| AraC | 196-213 | 8.011 |
| NarL | 117-123 | 7.791 |
| UlaR | 88-107 | 7.668 |
| TyrR | 301-322 | 7.504 |
| TorR | 165-174 | 7.462 |
| GcvA | 234-262 | 7.230 |
| XylR | 160-177 | 7.177 |
| CaiF | 345-389 | 7.078 |
| DeoR | 373-388 | 6.955 |
| OxyR | 97-141 | 6.830 |
| GalS | 77-92 | 6.696 |
| GalR | 77-92 | 6.696 |
| FadR | 375-391 | 6.681 |
| MalT | 247-256 | 6.616 |
| LexA | 166-185 | 6.466 |
| UxuR | 195-212 | 6.096 |
| RhaS | 39-55 | 5.913 |
| IdnR | 220-235 | 5.913 |
| PspF | 225-241 | 5.340 |