| TF name | Position | PWM scan score |
| ArcA | 120-180 | 33.248 |
| FNR | 120-141 | 22.268 |
| NagC | 120-142 | 21.518 |
| GcvA | 23-51 | 21.332 |
| OmpR | 318-337 | 20.689 |
| PhoP | 152-168 | 20.165 |
| ModE | 297-323 | 19.037 |
| CytR | 15-54 | 18.344 |
| OxyR | 294-338 | 18.121 |
| PhoB | 329-348 | 17.867 |
| CysB | 134-175 | 17.276 |
| MarA | 358-378 | 16.858 |
| H-NS | 128-142 | 16.417 |
| MelR | 371-388 | 14.968 |
| CRP | 10-31 | 14.524 |
| AgaR | 238-261 | 14.128 |
| Fis | 204-224 | 14.044 |
| GadE | 129-148 | 14.035 |
| CpxR | 243-257 | 13.432 |
| DcuR | 100-154 | 13.139 |
| IHF | 374-386 | 12.434 |
| Nac | 42-56 | 12.416 |
| Rob | 243-263 | 12.274 |
| ArgR | 316-331 | 12.233 |
| RcsB | 30-43 | 12.049 |
| ArgP | 71-83 | 11.988 |
| DeoR | 126-141 | 11.694 |
| Lrp | 69-80 | 11.576 |
| DnaA | 284-292 | 11.330 |
| XylR | 221-238 | 11.301 |
| LacI | 358-378 | 11.300 |
| MetR | 362-385 | 11.132 |
| Ada | 222-249 | 10.797 |
| Fur | 327-341 | 10.699 |
| PspF | 237-253 | 10.514 |
| FhlA | 36-75 | 10.419 |
| UlaR | 111-130 | 10.377 |
| Mlc | 122-144 | 10.300 |
| SoxS | 124-141 | 9.412 |
| FruR | 126-143 | 9.016 |
| NarL | 281-287 | 8.932 |
| TorR | 32-41 | 8.656 |
| AraC | 195-212 | 8.598 |
| GlpR | 125-144 | 8.585 |
| UxuR | 77-94 | 8.235 |
| NorR | 245-261 | 7.801 |
| IdnR | 241-256 | 7.696 |
| GntR | 121-140 | 7.475 |
| TyrR | 240-261 | 6.664 |
| GalR | 125-140 | 6.450 |
| GalS | 125-140 | 6.450 |
| PurR | 374-389 | 6.440 |
| MalT | 173-182 | 6.329 |
| NarP | 379-385 | 6.176 |
| CueR | 46-64 | 5.711 |
| MetJ | 276-283 | 5.575 |
| NtrC | 81-97 | 5.293 |
| FadR | 328-344 | 5.119 |