| TF name | Position | PWM scan score |
| ArcA | 183-243 | 30.230 |
| CysB | 208-249 | 22.637 |
| DcuR | 90-144 | 20.465 |
| FNR | 21-42 | 18.959 |
| AgaR | 283-306 | 18.819 |
| GcvA | 320-348 | 18.519 |
| NagC | 120-142 | 18.426 |
| Fis | 201-221 | 17.940 |
| PhoP | 226-242 | 17.031 |
| GadE | 331-350 | 16.909 |
| IHF | 27-39 | 15.548 |
| MarA | 368-388 | 15.414 |
| CpxR | 160-174 | 15.392 |
| CytR | 23-62 | 14.730 |
| Mlc | 118-140 | 14.425 |
| Ada | 268-295 | 14.064 |
| PurR | 267-282 | 13.996 |
| OxyR | 149-193 | 13.584 |
| OmpR | 227-246 | 13.464 |
| H-NS | 383-397 | 13.315 |
| Lrp | 21-32 | 13.133 |
| PspF | 284-300 | 13.089 |
| SoxS | 370-387 | 12.447 |
| Fur | 201-215 | 11.676 |
| PhoB | 316-335 | 11.633 |
| UxuR | 23-40 | 11.512 |
| FadR | 370-386 | 11.342 |
| UlaR | 274-293 | 10.896 |
| TorR | 310-319 | 10.810 |
| AraC | 277-294 | 10.673 |
| TyrR | 197-218 | 10.659 |
| RcsB | 324-337 | 10.632 |
| XylR | 197-214 | 10.595 |
| CRP | 198-219 | 10.564 |
| DeoR | 331-346 | 10.490 |
| LexA | 202-221 | 10.032 |
| ArgP | 370-382 | 9.953 |
| MelR | 318-335 | 9.742 |
| NarL | 206-212 | 9.580 |
| GalR | 267-282 | 9.354 |
| GalS | 267-282 | 9.354 |
| NorR | 200-216 | 8.976 |
| Rob | 282-302 | 8.895 |
| FruR | 237-254 | 8.648 |
| LacI | 134-154 | 8.527 |
| Nac | 353-367 | 8.523 |
| ArgR | 277-292 | 8.415 |
| GlpR | 26-45 | 8.363 |
| DnaA | 26-34 | 8.304 |
| GntR | 133-152 | 8.042 |
| IdnR | 289-304 | 7.706 |
| MetR | 125-148 | 7.679 |
| TrpR | 357-374 | 6.820 |
| MalT | 61-70 | 6.661 |
| MetJ | 201-208 | 6.375 |
| NarP | 296-302 | 6.176 |
| RhaS | 56-72 | 6.093 |
| FhlA | 30-69 | 5.464 |
| ModE | 313-339 | 5.327 |