| TF name | Position | PWM scan score |
| ArcA | 153-213 | 41.692 |
| OxyR | 153-197 | 23.808 |
| PhoB | 144-163 | 23.784 |
| AgaR | 147-170 | 22.389 |
| CytR | 73-112 | 21.343 |
| CysB | 348-389 | 19.987 |
| Mlc | 72-94 | 19.640 |
| NagC | 74-96 | 19.130 |
| DcuR | 86-140 | 18.746 |
| TyrR | 158-179 | 18.126 |
| ModE | 179-205 | 17.882 |
| OmpR | 92-111 | 17.878 |
| GcvA | 370-398 | 17.816 |
| GalR | 211-226 | 17.223 |
| GalS | 211-226 | 17.223 |
| ArgR | 284-299 | 16.742 |
| RcsB | 186-199 | 16.291 |
| FNR | 170-191 | 15.714 |
| UlaR | 301-320 | 15.011 |
| Fis | 6-26 | 14.929 |
| H-NS | 93-107 | 14.624 |
| CRP | 73-94 | 14.237 |
| IHF | 67-79 | 13.786 |
| Ada | 340-367 | 13.634 |
| Rob | 79-99 | 13.608 |
| ArgP | 5-17 | 13.606 |
| CpxR | 90-104 | 13.461 |
| PspF | 126-142 | 13.200 |
| FhlA | 74-113 | 12.822 |
| GadE | 141-160 | 12.766 |
| NorR | 29-45 | 12.733 |
| Nac | 172-186 | 12.692 |
| XylR | 70-87 | 12.323 |
| TorR | 173-182 | 12.278 |
| UxuR | 95-112 | 12.056 |
| MetR | 177-200 | 12.007 |
| SoxS | 222-239 | 12.004 |
| GlpR | 201-220 | 11.853 |
| DeoR | 141-156 | 11.848 |
| Lrp | 349-360 | 11.713 |
| PhoP | 141-157 | 11.482 |
| Fur | 353-367 | 11.231 |
| LexA | 138-157 | 11.042 |
| MarA | 223-243 | 10.955 |
| MelR | 86-103 | 10.717 |
| IdnR | 136-151 | 9.838 |
| NtrC | 339-355 | 9.646 |
| NarL | 181-187 | 9.333 |
| AraC | 180-197 | 9.116 |
| GntR | 171-190 | 9.073 |
| CueR | 219-237 | 9.008 |
| FruR | 151-168 | 8.858 |
| PurR | 373-388 | 8.561 |
| DnaA | 8-16 | 8.160 |
| MetJ | 100-107 | 7.996 |
| FadR | 57-73 | 7.771 |
| NarP | 356-362 | 7.762 |
| LacI | 79-99 | 7.362 |
| MalT | 311-320 | 6.894 |
| TrpR | 178-195 | 6.183 |
| CaiF | 71-115 | 5.937 |