| TF name | Position | PWM scan score |
| ArcA | 126-186 | 27.765 |
| CytR | 170-209 | 23.103 |
| OmpR | 266-285 | 20.920 |
| OxyR | 194-238 | 17.297 |
| GadE | 200-219 | 17.087 |
| PhoP | 151-167 | 16.622 |
| FNR | 284-305 | 16.540 |
| MarA | 149-169 | 16.040 |
| GlpR | 283-302 | 15.404 |
| RcsB | 26-39 | 15.248 |
| CysB | 132-173 | 15.158 |
| IHF | 160-172 | 15.092 |
| ArgP | 279-291 | 14.625 |
| Ada | 265-292 | 14.611 |
| PhoB | 158-177 | 14.566 |
| GcvA | 123-151 | 14.291 |
| AgaR | 260-283 | 14.137 |
| DcuR | 194-248 | 14.123 |
| CRP | 269-290 | 14.093 |
| H-NS | 28-42 | 14.012 |
| Mlc | 259-281 | 13.938 |
| DnaA | 219-227 | 13.779 |
| Nac | 270-284 | 13.721 |
| MetR | 270-293 | 13.609 |
| AraC | 32-49 | 13.158 |
| CaiF | 178-222 | 12.989 |
| Lrp | 167-178 | 12.343 |
| Fis | 150-170 | 12.138 |
| ArgR | 260-275 | 12.067 |
| Rob | 220-240 | 11.984 |
| NagC | 265-287 | 11.947 |
| UlaR | 197-216 | 11.572 |
| TorR | 31-40 | 11.212 |
| ModE | 267-293 | 11.016 |
| TyrR | 219-240 | 10.746 |
| CpxR | 264-278 | 10.717 |
| Fur | 225-239 | 10.588 |
| FhlA | 10-49 | 10.430 |
| SoxS | 151-168 | 9.905 |
| MetJ | 101-108 | 9.850 |
| XylR | 163-180 | 9.743 |
| MelR | 159-176 | 9.678 |
| NorR | 52-68 | 9.587 |
| UxuR | 108-125 | 9.487 |
| PspF | 304-320 | 9.114 |
| IdnR | 231-246 | 8.767 |
| DeoR | 197-212 | 8.763 |
| GntR | 165-184 | 8.535 |
| NarL | 167-173 | 8.154 |
| NarP | 239-245 | 8.031 |
| LexA | 64-83 | 7.214 |
| LacI | 294-314 | 7.006 |
| NtrC | 177-193 | 6.698 |
| FruR | 24-41 | 6.273 |
| PurR | 289-304 | 6.197 |