| TF name | Position | PWM scan score |
| ArcA | 190-250 | 28.179 |
| OmpR | 224-243 | 19.667 |
| AgaR | 213-236 | 19.334 |
| Rob | 212-232 | 19.127 |
| Mlc | 205-227 | 18.981 |
| CysB | 270-311 | 18.526 |
| NagC | 224-246 | 17.982 |
| GadE | 13-32 | 16.731 |
| FhlA | 196-235 | 15.974 |
| IHF | 142-154 | 15.898 |
| PhoB | 225-244 | 15.806 |
| Nac | 27-41 | 15.225 |
| CytR | 116-155 | 15.091 |
| CRP | 289-310 | 14.951 |
| ArgP | 282-294 | 14.150 |
| FNR | 206-227 | 13.542 |
| UxuR | 297-314 | 13.231 |
| OxyR | 207-251 | 12.775 |
| GalS | 312-327 | 12.292 |
| GalR | 312-327 | 12.292 |
| GlpR | 352-371 | 12.226 |
| H-NS | 227-241 | 12.113 |
| Fis | 203-223 | 12.052 |
| CpxR | 144-158 | 11.977 |
| SoxS | 104-121 | 11.891 |
| Fur | 29-43 | 11.846 |
| PspF | 22-38 | 11.471 |
| XylR | 290-307 | 11.101 |
| RcsB | 29-42 | 10.773 |
| DeoR | 230-245 | 10.726 |
| MelR | 366-383 | 10.591 |
| MarA | 23-43 | 10.514 |
| GntR | 224-243 | 10.406 |
| DcuR | 215-269 | 10.262 |
| Lrp | 28-39 | 10.231 |
| IdnR | 235-250 | 9.838 |
| ArgR | 231-246 | 9.681 |
| NarP | 392-398 | 9.680 |
| FadR | 89-105 | 9.549 |
| Ada | 209-236 | 9.491 |
| GcvA | 358-386 | 9.360 |
| PhoP | 207-223 | 9.351 |
| MetR | 210-233 | 9.258 |
| DnaA | 208-216 | 8.866 |
| NarL | 72-78 | 8.792 |
| ModE | 261-287 | 8.783 |
| UlaR | 230-249 | 8.516 |
| NorR | 145-161 | 8.254 |
| TyrR | 206-227 | 8.119 |
| TorR | 205-214 | 7.898 |
| AraC | 216-233 | 7.845 |
| MetJ | 35-42 | 7.327 |
| LacI | 243-263 | 7.288 |
| TrpR | 298-315 | 6.692 |
| FruR | 57-74 | 6.129 |
| RhaS | 253-269 | 5.411 |