| TF name | Position | PWM scan score |
| ArcA | 304-364 | 22.591 |
| CytR | 342-381 | 19.630 |
| OmpR | 343-362 | 15.242 |
| PhoB | 53-72 | 14.136 |
| RcsB | 228-241 | 13.766 |
| GcvA | 38-66 | 13.662 |
| UlaR | 306-325 | 13.645 |
| H-NS | 176-190 | 13.485 |
| ArgP | 66-78 | 13.114 |
| Fis | 5-25 | 12.958 |
| GadE | 103-122 | 12.949 |
| Nac | 364-378 | 12.788 |
| FNR | 227-248 | 12.302 |
| Mlc | 64-86 | 12.158 |
| MelR | 353-370 | 12.133 |
| NagC | 328-350 | 11.837 |
| IHF | 356-368 | 11.531 |
| AraC | 382-399 | 11.493 |
| PurR | 59-74 | 11.065 |
| CRP | 303-324 | 11.032 |
| DcuR | 100-154 | 10.795 |
| FadR | 279-295 | 10.791 |
| Lrp | 352-363 | 10.438 |
| Rob | 125-145 | 10.381 |
| FhlA | 152-191 | 10.243 |
| CysB | 318-359 | 9.979 |
| UxuR | 331-348 | 9.672 |
| NorR | 314-330 | 9.604 |
| PspF | 42-58 | 9.453 |
| CaiF | 233-277 | 9.380 |
| AgaR | 301-324 | 9.319 |
| XylR | 362-379 | 9.185 |
| DeoR | 366-381 | 9.157 |
| OxyR | 104-148 | 9.019 |
| SoxS | 255-272 | 8.899 |
| LacI | 241-261 | 8.879 |
| MetR | 344-367 | 8.825 |
| Ada | 353-380 | 8.695 |
| NarL | 367-373 | 8.681 |
| ModE | 240-266 | 8.635 |
| NarP | 345-351 | 8.372 |
| MetJ | 306-313 | 8.331 |
| MarA | 56-76 | 8.262 |
| PhoP | 316-332 | 8.141 |
| TyrR | 337-358 | 7.377 |
| GntR | 191-210 | 7.190 |
| ArgR | 206-221 | 6.929 |
| TorR | 230-239 | 6.762 |
| GlpR | 178-197 | 6.719 |
| TrpR | 359-376 | 6.615 |
| CpxR | 313-327 | 6.539 |
| DnaA | 170-178 | 6.459 |
| IdnR | 108-123 | 5.923 |
| LexA | 133-152 | 5.687 |
| CueR | 98-116 | 5.335 |
| MalT | 316-325 | 5.303 |
| FruR | 99-116 | 5.128 |