| TF name | Position | PWM scan score |
| ArcA | 173-233 | 29.624 |
| CytR | 293-332 | 21.211 |
| CysB | 63-104 | 20.847 |
| GcvA | 319-347 | 19.318 |
| FNR | 32-53 | 17.441 |
| ModE | 361-387 | 16.991 |
| AgaR | 365-388 | 16.865 |
| Fis | 160-180 | 16.688 |
| RcsB | 370-383 | 16.535 |
| OmpR | 48-67 | 16.497 |
| Mlc | 10-32 | 16.005 |
| Fur | 94-108 | 15.710 |
| ArgR | 320-335 | 15.619 |
| H-NS | 313-327 | 14.138 |
| DcuR | 166-220 | 13.579 |
| PhoP | 205-221 | 13.492 |
| CRP | 159-180 | 13.471 |
| GadE | 46-65 | 13.414 |
| FhlA | 132-171 | 13.338 |
| NagC | 137-159 | 12.939 |
| MarA | 160-180 | 12.713 |
| Nac | 132-146 | 12.499 |
| PspF | 207-223 | 12.495 |
| IHF | 367-379 | 12.311 |
| TyrR | 134-155 | 12.238 |
| AraC | 329-346 | 12.210 |
| MetJ | 53-60 | 11.820 |
| XylR | 179-196 | 11.645 |
| Rob | 73-93 | 11.610 |
| SoxS | 162-179 | 11.602 |
| UlaR | 358-377 | 11.399 |
| Lrp | 369-380 | 11.279 |
| IdnR | 347-362 | 10.936 |
| PhoB | 362-381 | 10.855 |
| MelR | 288-305 | 10.738 |
| ArgP | 169-181 | 10.526 |
| OxyR | 200-244 | 10.145 |
| UxuR | 38-55 | 10.028 |
| TorR | 307-316 | 9.980 |
| Ada | 26-53 | 9.961 |
| DeoR | 163-178 | 9.463 |
| MetR | 52-75 | 9.390 |
| GlpR | 104-123 | 9.273 |
| CpxR | 266-280 | 9.211 |
| DnaA | 138-146 | 9.103 |
| LacI | 183-203 | 8.255 |
| NarL | 209-215 | 8.154 |
| CueR | 247-265 | 7.927 |
| GntR | 11-30 | 7.170 |
| NorR | 300-316 | 7.079 |
| GalR | 323-338 | 6.867 |
| GalS | 323-338 | 6.867 |
| RhaS | 308-324 | 6.681 |
| MalT | 29-38 | 5.929 |
| LexA | 128-147 | 5.400 |
| NarP | 97-103 | 5.368 |
| NtrC | 214-230 | 5.046 |