| TF name | Position | PWM scan score |
| ArcA | 190-250 | 32.367 |
| Fis | 124-144 | 17.667 |
| CytR | 194-233 | 17.221 |
| PhoB | 31-50 | 16.886 |
| NagC | 182-204 | 15.852 |
| AgaR | 190-213 | 15.812 |
| OxyR | 150-194 | 15.564 |
| GadE | 78-97 | 15.417 |
| CysB | 184-225 | 14.710 |
| Nac | 183-197 | 14.232 |
| MarA | 1-21 | 14.046 |
| OmpR | 185-204 | 13.977 |
| SoxS | 240-257 | 13.933 |
| PhoP | 84-100 | 12.806 |
| H-NS | 130-144 | 12.610 |
| IHF | 33-45 | 12.296 |
| ArgP | 190-202 | 12.240 |
| CRP | 190-211 | 11.884 |
| ModE | 53-79 | 11.812 |
| FNR | 184-205 | 11.806 |
| GntR | 17-36 | 11.731 |
| LexA | 332-351 | 11.571 |
| CpxR | 75-89 | 11.278 |
| Rob | 246-266 | 11.130 |
| GcvA | 297-325 | 10.837 |
| TorR | 272-281 | 10.778 |
| DeoR | 217-232 | 10.624 |
| DcuR | 169-223 | 10.604 |
| IdnR | 86-101 | 10.570 |
| PspF | 131-147 | 10.551 |
| Ada | 195-222 | 10.515 |
| MetR | 187-210 | 10.215 |
| UlaR | 188-207 | 10.195 |
| PurR | 375-390 | 10.025 |
| AraC | 191-208 | 9.960 |
| GlpR | 93-112 | 9.956 |
| UxuR | 188-205 | 9.840 |
| Lrp | 67-78 | 9.621 |
| ArgR | 334-349 | 9.046 |
| XylR | 15-32 | 9.011 |
| NarL | 218-224 | 8.928 |
| DnaA | 209-217 | 8.765 |
| MetJ | 64-71 | 8.714 |
| Mlc | 348-370 | 8.655 |
| MelR | 155-172 | 8.629 |
| Fur | 192-206 | 8.527 |
| FadR | 46-62 | 8.387 |
| FruR | 376-393 | 7.950 |
| RcsB | 138-151 | 7.894 |
| FhlA | 273-312 | 7.671 |
| TyrR | 180-201 | 7.408 |
| RhaS | 340-356 | 7.280 |
| NtrC | 231-247 | 7.156 |
| NorR | 154-170 | 6.740 |
| LacI | 118-138 | 6.620 |
| MalT | 267-276 | 6.474 |
| TrpR | 257-274 | 6.218 |